View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_261 (Length: 211)
Name: NF1408_low_261
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_261 |
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Alignment Details
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 42634799 - 42634714
Alignment:
| Q |
54 |
ttcatgtataattcatagtcgggaagagcatgttgtataatggggattttagcattttatattagttatggaagatattattggag |
139 |
Q |
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| T |
42634799 |
ttcatgtataattctttgtcgggaagagcatgttgtataatggggattttagcattttatattagttatggaagatgttgttggag |
42634714 |
T |
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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 42634860 - 42634828
Alignment:
| Q |
1 |
attacacacagaaatctctatacaacacagaaa |
33 |
Q |
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| T |
42634860 |
attacacacagaaatctctatacaacgcagaaa |
42634828 |
T |
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