View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_264 (Length: 210)
Name: NF1408_low_264
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_264 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 33 - 202
Target Start/End: Original strand, 27435881 - 27436053
Alignment:
| Q |
33 |
attattatcccctttt-ttcagtaatcgtaaccactgtataaagtctcactcagcacccaacttaacatatcataacataccatactac--gtacgatca |
129 |
Q |
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| T |
27435881 |
attataatcccctttttttcagtaatcgtaaccactatataaagactcactcagcacccaacttaacatatcataacataccatactaccatcaagttca |
27435980 |
T |
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| Q |
130 |
agtcagaagaagaagtcatgaatcatcgtaaccaaactttcatgctgttctctgttcttttcctgttcatctc |
202 |
Q |
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| T |
27435981 |
agtcagaagaagaagtcatgaatcatcgtaaccaaactttcatgctgttctctgtccttttcctgttcttctc |
27436053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 27944357 - 27944481
Alignment:
| Q |
1 |
tccacatgtcatgcatctatttgttatca----ttcattattatccccttttttcagtaatcgtaaccactgtataaagtctcactcagcacccaactta |
96 |
Q |
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| T |
27944357 |
tccacgtgtcatgcatctatttgttatcactcattcattattatccccttttttcagtaatcgtaaccactatataaagactcactcagcacccaactta |
27944456 |
T |
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| Q |
97 |
acatatcataacataccatactacg |
121 |
Q |
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| T |
27944457 |
acatatcataacataccatactacg |
27944481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 27550572 - 27550501
Alignment:
| Q |
1 |
tccacatgtcatgcatctatttgttatcattcattattatccccttttttcagtaatcgtaaccactgtataaag |
75 |
Q |
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| T |
27550572 |
tccacgtgtcctgcatctatttgttatcactcattattatccctttatt---gtaatcgtaaccactatataaag |
27550501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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