View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_27 (Length: 466)
Name: NF1408_low_27
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 153 - 457
Target Start/End: Complemental strand, 581218 - 580914
Alignment:
| Q |
153 |
aatataattaattacgaaccttgagaacaagtgtctcgagaaccggtgccttttgaagcaaggttaagagaatatcaacactaacaaatccaacctccaa |
252 |
Q |
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| T |
581218 |
aatataagtaattacgaaccttgagaacaagtgtctcgagaaccggtgccttttgaagcaaggttaagagaatatcaacactaacgaagccaacctccaa |
581119 |
T |
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| Q |
253 |
atgggtcaacattggaaatacacatagcttttttggtagcatctttttcagatccagaacctggaatggatgacgcaacgaaactgatttatattataac |
352 |
Q |
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| T |
581118 |
atgggtcaacattggaaatacacatagcttttttggtagcatctttttcagatccagaacctggaatggatgacacaacgaaactgatttatattacaac |
581019 |
T |
|
| Q |
353 |
aaaaggattaaactcataaatatttatcctacttgtgctacattattataaaaataaattacttcaagatcatgacattcattgttaaaaacactaaaga |
452 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
581018 |
aaaaggattaaactcataaatatttatcctacttgtgatacattattataaaaataaattacttcaagatcatgacattcattgttaaaaacactaaaga |
580919 |
T |
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| Q |
453 |
ataat |
457 |
Q |
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||||| |
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| T |
580918 |
ataat |
580914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 30 - 160
Target Start/End: Complemental strand, 581410 - 581268
Alignment:
| Q |
30 |
aaaatcacatatttcctaaccattaataataaaaagaaataccaaataagactcttacaaagcaaacaaattaccagtaagaagtcacaaac-------- |
121 |
Q |
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| T |
581410 |
aaaatcacatatttcctaaccattaataataaaa-gaaataccaaataagactcttacaaagcaaacaaattaccagtaagaagtcacaaacaggacctt |
581312 |
T |
|
| Q |
122 |
-----gacttttatacgatatgaagcttgtattatgaatataat |
160 |
Q |
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| T |
581311 |
actaagacttttatacgaaatgaagcttgtattatgaatataat |
581268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 161 - 295
Target Start/End: Complemental strand, 1207650 - 1207516
Alignment:
| Q |
161 |
taattacgaaccttgagaacaagtgtctcgagaaccggtgccttttgaagcaaggttaagagaatatcaacactaacaaatccaacctccaaatgggtca |
260 |
Q |
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||||||| |||||| ||||| ||||||| |||||| |||| ||||||||| || | ||||||||| || |||||||| || ||||||||||||| ||||| |
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| T |
1207650 |
taattacaaaccttaagaacgagtgtcttgagaacaggtgtcttttgaagtaatgctaagagaatttcgacactaactaagccaacctccaaatcggtca |
1207551 |
T |
|
| Q |
261 |
acattggaaatacacatagcttttttggtagcatc |
295 |
Q |
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| T |
1207550 |
acattggaaatacgcacagctcttttggttgcatc |
1207516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 161 - 279
Target Start/End: Complemental strand, 1201469 - 1201351
Alignment:
| Q |
161 |
taattacgaaccttgagaacaagtgtctcgagaaccggtgccttttgaagcaaggttaagagaatatcaacactaacaaatccaacctccaaatgggtca |
260 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||| |||||| || ||| |||||| |||||||||||| || |||||||||||||| |||| |
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| T |
1201469 |
taattacgaaccttgagaactagtgtcttgagaaccggtgtcttttgtagtaagaccaagagattatcaacactaatcaagccaacctccaaatgtgtca |
1201370 |
T |
|
| Q |
261 |
acattggaaatacacatag |
279 |
Q |
| |
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|| ||| |||||||||||| |
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| T |
1201369 |
acgttgaaaatacacatag |
1201351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 182 - 278
Target Start/End: Complemental strand, 1214837 - 1214741
Alignment:
| Q |
182 |
agtgtctcgagaaccggtgccttttgaagcaaggttaagagaatatcaacactaacaaatccaacctccaaatgggtcaacattggaaatacacata |
278 |
Q |
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| T |
1214837 |
agtgtcttgagaaccggtgtcttttcaagcaaggctaacagaatatcaacactaagtaagccaacatccaaatgggccaacattggaaatacacata |
1214741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 160
Target Start/End: Complemental strand, 1214906 - 1214868
Alignment:
| Q |
122 |
gacttttatacgatatgaagcttgtattatgaatataat |
160 |
Q |
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| T |
1214906 |
gacttttatatgatatgaagcttgtatcatgaatataat |
1214868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 161 - 282
Target Start/End: Original strand, 8188730 - 8188851
Alignment:
| Q |
161 |
taattacgaaccttgagaacaagtgtctcgagaaccggtgccttttgaagcaaggttaagagaatatcaacactaacaaatccaacctccaaatgggtca |
260 |
Q |
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||||||| |||||| ||||| ||||||| ||||||||| | |||||||||||||| ||| ||||||| ||||||||| || ||||||||||||| ||||| |
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| T |
8188730 |
taattaccaaccttaagaactagtgtcttgagaaccggcgtcttttgaagcaaggctaacagaatattaacactaactaaaccaacctccaaatcggtca |
8188829 |
T |
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| Q |
261 |
acattggaaatacacatagctt |
282 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
8188830 |
acattggaaatacacatagctt |
8188851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 347
Target Start/End: Original strand, 8188864 - 8188904
Alignment:
| Q |
307 |
cagaacctggaatggatgacgcaacgaaactgatttatatt |
347 |
Q |
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| T |
8188864 |
cagaacctggaatgaatggcacaacgaaactgatttatatt |
8188904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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