View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_279 (Length: 203)
Name: NF1408_low_279
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_279 |
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Alignment Details
Target: chr3 (Bit Score: 75; Significance: 9e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 25 - 132
Target Start/End: Complemental strand, 52127171 - 52127064
Alignment:
| Q |
25 |
ctgaccgcaagtaggattgaagctaggtggatttcaaaaggttgtnnnnnnngaagaagaaagggtaccttgtataaatctatttgtactaatttgttgc |
124 |
Q |
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| T |
52127171 |
ctgaccgcaagtaggattgaagctaggtggatttcaaaaggttgtacaaaaaaaagaagaaagggtaccttgtataaatcaatttgtattaatttgttgc |
52127072 |
T |
|
| Q |
125 |
tgcattgg |
132 |
Q |
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|||||||| |
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| T |
52127071 |
tgcattgg |
52127064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 189
Target Start/End: Complemental strand, 52127012 - 52126984
Alignment:
| Q |
161 |
tttggagctagttgaaatttggagcaaca |
189 |
Q |
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| T |
52127012 |
tttggagctagttgaaatttggagcaaca |
52126984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 3e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 25 - 132
Target Start/End: Complemental strand, 24759706 - 24759598
Alignment:
| Q |
25 |
ctgaccgcaagtaggattgaagctaggtggatttcaaaaggttgt-nnnnnnngaagaagaaagggtaccttgtataaatctatttgtactaatttgttg |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
24759706 |
ctgaccgcaagtaggattgaagctaggtggatttcaaaaggttgtacaaaaaaaaaaaagaaagggtaccttgtataaatcaatttgtattaatttgttg |
24759607 |
T |
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| Q |
124 |
ctgcattgg |
132 |
Q |
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||||||||| |
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|
| T |
24759606 |
ctgcattgg |
24759598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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