View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_280 (Length: 202)
Name: NF1408_low_280
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_280 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 47 - 176
Target Start/End: Original strand, 29215323 - 29215455
Alignment:
| Q |
47 |
actaagaatacttgtcgacgctcttg---cattgcgtttattaaggcctacatgaaagtgcattgcaaaataaacatttcgaacacatgtgtaataatac |
143 |
Q |
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| T |
29215323 |
actaagaatacttgtcgacgctcttgttgcattgcgtttattaaggcctacatgaaagtgcattgcaaaataaacatttcgaacacatgtgtaataatac |
29215422 |
T |
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| Q |
144 |
gcatatacttagcacatgtgaattagtatttaa |
176 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
29215423 |
gcatatacttagcacatgtgaattagtacttaa |
29215455 |
T |
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