View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1408_low_285 (Length: 202)

Name: NF1408_low_285
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1408_low_285
NF1408_low_285
[»] chr1 (4 HSPs)
chr1 (10-100)||(33887828-33887918)
chr1 (10-100)||(33956332-33956422)
chr1 (138-167)||(33887800-33887829)
chr1 (138-167)||(33956421-33956450)


Alignment Details
Target: chr1 (Bit Score: 87; Significance: 7e-42; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 33887918 - 33887828
Alignment:
Q  10 agattatactacaattgaagatcaaccttattgcagcttgaacgacaagtgaactcattttttgaatgacacttggtttatcgctccaatt 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33887918 agattatactacaattgaagaccaaccttattgcagcttgaacgacaagtgaactcattttttgaatgacacttggtttatcgctccaatt 33887828  T

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Target: chr1; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 33956332 - 33956422
Alignment:
Q  10 agattatactacaattgaagatcaaccttattgcagcttgaacgacaagtgaactcattttttgaatgacacttggtttatcgctccaatt 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33956332 agattatactacaattgaagaccaaccttattgcagcttgaacgacaagtgaactcattttttgaatgacacttggtttatcgctccaatt 33956422  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 167
Target Start/End: Complemental strand, 33887829 - 33887800
Alignment:
Q  138 ttgtagaattgtttttatgagttgagttga 167  Q
    ||||||||||||||||||||||||||||||    
T  33887829 ttgtagaattgtttttatgagttgagttga 33887800  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 167
Target Start/End: Original strand, 33956421 - 33956450
Alignment:
Q  138 ttgtagaattgtttttatgagttgagttga 167  Q
    ||||||||||||||||||||||||||||||    
T  33956421 ttgtagaattgtttttatgagttgagttga 33956450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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