View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_287 (Length: 201)
Name: NF1408_low_287
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_287 |
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Alignment Details
Target: chr6 (Bit Score: 117; Significance: 8e-60; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 6264100 - 6264220
Alignment:
| Q |
1 |
tagattgttgaaattaaagttaaggtttaactatatatataggcatgtttcctattaattttgcactacttgcggttatttgtgtgtgaaagagatatcg |
100 |
Q |
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| T |
6264100 |
tagattgttgaaattaaagttaaggtttaactatatatataggcatgtttcctattaattttgcactacttgcggttatttgtttgtgaaagagatatcg |
6264199 |
T |
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| Q |
101 |
atcagtttgatcaggaaaatt |
121 |
Q |
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| T |
6264200 |
atcagtttgatcaggaaaatt |
6264220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 6280812 - 6280852
Alignment:
| Q |
81 |
tgtgtgtgaaagagatatcgatcagtttgatcaggaaaatt |
121 |
Q |
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| T |
6280812 |
tgtgtgtgaaagagatatggatcagtttgatcaggaaaatt |
6280852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 6226546 - 6226611
Alignment:
| Q |
13 |
attaaagttaaggtttaactatatatataggcatg-tttcctattaattttgcactacttgcggtt |
77 |
Q |
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| T |
6226546 |
attaatgttgagatttaactgtatatataggcaagatttcctatggattttgcactacttgcggtt |
6226611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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