View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1408_low_3 (Length: 649)

Name: NF1408_low_3
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1408_low_3
NF1408_low_3
[»] chr1 (1 HSPs)
chr1 (30-643)||(26427523-26428139)
[»] chr2 (4 HSPs)
chr2 (178-296)||(28008932-28009053)
chr2 (409-634)||(28009109-28009349)
chr2 (328-377)||(28009058-28009107)
chr2 (107-144)||(28008852-28008889)


Alignment Details
Target: chr1 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 30 - 643
Target Start/End: Complemental strand, 26428139 - 26427523
Alignment:
Q  30 ttcttctatatactttcttaattctagcacactgtcaggtctcactttctagattttctacctatattttctactttcaaacattcttgtacttatttgt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26428139 ttcttctatatactttcttaattctagcacactgtcaggtctcactttctagattttctacctatattttctactttcaaacattcttgtacttatttgt 26428040  T
Q  130 ctttaattaactaaccctatttatgnnnnnnnn---cttgcagattccctatttttgttaacatgggagcacttagcacatacttcaactataattgtta 226  Q
    |||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26428039 ctttaattaactaaccctatttatgtttttttttttcttgcagattccctatttttgttaacatgggagcacttagcacatacttcaactataattgtta 26427940  T
Q  227 cccttatcaacctattcaaactaccaacaactcagaaatcactacttttcaacatcatgaacaagaacaatttgtccaacaaaaccaccatttttcctct 326  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26427939 tccttatcaacctattcaaactaccaacaactcagaaatcactacttttcaacatcatgaacaagaacaatttgtccaacaaaaccaccatttttcctct 26427840  T
Q  327 aactatttgaatgaaacttctcttttagatgaaagcttcatttttcaaactccttgtttttactcaactgaaacttaccctaacccttgtcaagatgatc 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26427839 aactatttgaatgaaacttctcttttagatgaaagcttcatttttcaaactccttgtttttactcaactgaaacttaccctaacccttgtcaagatgatc 26427740  T
Q  427 aactacttgttgactccactttttcttctcaaaatgatggcttcgtttcaatgaatgaaattttcccaaatgaggaagatttcaccaattacctgacatg 526  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26427739 aactacttgttgactccactttttcttctcaaaatgatggcttcgtttcaatgaatgaaattttcccaaatgaggaagatttcaccaattacctgacatg 26427640  T
Q  527 tccaaaacgccaaaagctatgctacgatgagaaaagagaggaaccacaacaagagcttttgaactcaactaannnnnnngtggatgagtttatgactaac 626  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||       |||||||||||||||||||||    
T  26427639 tccaaaacgccaaaagctatgctacgatgagaaaagagaggaaccacaacaagagcttttgaactcaaccaatttttttgtggatgagtttatgactaac 26427540  T
Q  627 cctaacccctttgcttc 643  Q
    |||||||||||||||||    
T  26427539 cctaacccctttgcttc 26427523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 1e-46; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 178 - 296
Target Start/End: Original strand, 28008932 - 28009053
Alignment:
Q  178 tttttgttaacatgggagcacttagcacatacttcaactataattgttacccttatcaacctattcaaactacc---aacaactcagaaatcactacttt 274  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||   ||||||||||||||||| |||||    
T  28008932 tttttgttaacatgggagcacttagcacatacttcaattataattgttacccttatcaacctactcaaactaccaataacaactcagaaatcaccacttt 28009031  T
Q  275 tcaacatcatgaacaagaacaa 296  Q
    ||||||||||||||||||||||    
T  28009032 tcaacatcatgaacaagaacaa 28009053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 409 - 634
Target Start/End: Original strand, 28009109 - 28009349
Alignment:
Q  409 acccttgtcaagatgatcaactacttgttgactccactttttcttctcaaaatgatggcttcgtttcaatgaatgaaattttcccaaatgaggaaga--- 505  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||       
T  28009109 acccttgtcaagatcaacaactacttgttgactccactttttcttctcaaaatgatgactttgtttcaatgaatgaaattttcccaaatgaggaagattt 28009208  T
Q  506 ---tttcaccaattac---ctgacatgtccaaaacgccaaaagc---tatgct---acgatgagaaaagagaggaaccacaacaagagcttttgaactca 593  Q
       ||||| ||| |||   ||  |||||||||||||||||||||   ||| ||   | || ||||||||||| || ||||||||||||||||||||||||    
T  28009209 cattttcaacaactaccagcttccatgtccaaaacgccaaaagctgatatactatgaggaggagaaaagagaagagccacaacaagagcttttgaactca 28009308  T
Q  594 actaannnnnnngtggatgagtttatgactaaccctaaccc 634  Q
    || ||        ||||||||||| ||||||||||||||||    
T  28009309 accaatttttttatggatgagtttgtgactaaccctaaccc 28009349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 28009058 - 28009107
Alignment:
Q  328 actatttgaatgaaacttctcttttagatgaaagcttcatttttcaaact 377  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  28009058 actatttcaatgaagcttctcttttagatgaaagcttcatttttcaaact 28009107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 144
Target Start/End: Original strand, 28008852 - 28008889
Alignment:
Q  107 caaacattcttgtacttatttgtctttaattaactaac 144  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  28008852 caaacattctcgtacttgtttgtctttaattaactaac 28008889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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