View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1408_low_30 (Length: 463)
Name: NF1408_low_30
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_30 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 36 - 454
Target Start/End: Complemental strand, 24615385 - 24614965
Alignment:
| Q |
36 |
ctctgtttaccaagatcttgaagacataatctgctttccatattatttaaaacagatgatattgtcattgttttcctcacaaaccagtatttcctctcat |
135 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
24615385 |
ctctatttaccaagatcttgaagacataatctgctttctatattatttaaaacagatgatattgtcattgttttcctcacagaccagtatttcctc-cat |
24615287 |
T |
|
| Q |
136 |
gattttgttatatatatttgaaatgattcatgtaatacttattaactagtcctgtaatacttgaaattagattttgatgtttaaaaacaattcaaaactt |
235 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24615286 |
gattttcttatatatatttgaaatgattcatgtaatacttgttaactagtcctgtaatacttgaaattagattttgatgtttaaaaacaattcaaaactt |
24615187 |
T |
|
| Q |
236 |
gacattcacaacataataggacagaaa---aacagcattaacaaatccacaaaatttagcaagactgaagaataaagcaatttaataaagaagcctgcag |
332 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24615186 |
gacattcacaacataataggacagaaacataacagcattaacaaatccacaaaatttagtaagactgaagaataaagcaatttaataaagaagcctgcag |
24615087 |
T |
|
| Q |
333 |
aattggtacttaactttctatattaaactatgaaacaaacatcaaaaagatgtgaacattagttttcgacagacaataaaatgtcacatattattacaaa |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
24615086 |
aattggtacttaactttctatattaaactatgaaacaaacatcaaaaagatgtgaacattagttttcgacagacaataaaatgttacatattaatacaaa |
24614987 |
T |
|
| Q |
433 |
tttcttaaatcgagatattctt |
454 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
24614986 |
tttcttaaatcgagatattctt |
24614965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 201 - 441
Target Start/End: Original strand, 24108442 - 24108684
Alignment:
| Q |
201 |
attagattttgatgttta--aaaacaattcaaaacttgacattcacaacataataggacagaaa---aacagcattaacaaatccacaaaatttagcaag |
295 |
Q |
| |
|
||||| |||||||||||| |||| |||||||||||||| ||||||| ||||||| ||| ||| ||||||||||| ||||||||| ||||||| |
|
|
| T |
24108442 |
attagtttttgatgtttataaaaaaaattcaaaacttgaaattcacatcataatacaacaaaaacataacagcattaagaaatccacacaatttag---- |
24108537 |
T |
|
| Q |
296 |
actgaagaataaagcaatttaataaagaagcctgcagaattggtacttaactttctatattaaactatgaaacaaacatcaaaaagatgtgaacat-tag |
394 |
Q |
| |
|
|| ||||| ||||||||||||||||||||| |||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
24108538 |
acagaagattaaagcaatttaataaagaagtatgcagagttggtacttaactttttatattaaatgatgaaacaaacatcaaaaagatgtgaacatatag |
24108637 |
T |
|
| Q |
395 |
ttttcgacagacaataaaatgtcacatattattacaaatttcttaaa |
441 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||| ||||||||||| |
|
|
| T |
24108638 |
ttttcgacagacaatgaaatgtcacatattgatacgaatttcttaaa |
24108684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 305 - 442
Target Start/End: Original strand, 24116258 - 24116395
Alignment:
| Q |
305 |
taaagcaatttaataaagaagcctgcagaattggtacttaactttctatattaaactatgaaacaaacatcaaaaagatgtgaacattagttttcgacag |
404 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||| || || ||||||||||||| || ||||||||||||| |||||||||||| | |||||||| || |
|
|
| T |
24116258 |
taaagcaatttaataatgaagcttgcagaattggtagtttacattctatattaaacgataaaacaaacatcaacaagatgtgaacaatggttttcgatag |
24116357 |
T |
|
| Q |
405 |
acaataaaatgtcacatattattacaaatttcttaaat |
442 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
24116358 |
acaatgaaatgtcacatattgatacaaatttcttaaat |
24116395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 36 - 168
Target Start/End: Original strand, 24115918 - 24116047
Alignment:
| Q |
36 |
ctctgtttaccaagatcttgaagacataatctgctttccatattatttaaaacagat-gatattgtcattgttttcctcacaaaccagtatttcctctca |
134 |
Q |
| |
|
|||| |||||||||||||| || |||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
24115918 |
ctctatttaccaagatcttaaaaacataatctgctttttatattatttaaaacagatagatatcctcattgttttcctcacaaaccagtatttcctctca |
24116017 |
T |
|
| Q |
135 |
tgattttgttatatatatttgaaatgattcatgt |
168 |
Q |
| |
|
||||||| | ||||||||||||||||||||| |
|
|
| T |
24116018 |
tgattttct----tatatttgaaatgattcatgt |
24116047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 24102197 - 24102272
Alignment:
| Q |
98 |
tgtcattgttttcctcacaaaccagtatttcctctcatgattttgt--tatatatatttgaaatgattcatgtaat |
171 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
24102197 |
tgtcattattttcctcacaaaccagtatttcctctcatgattttcttatatatatatttgaaatgattcatgtaat |
24102272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 441
Target Start/End: Complemental strand, 23693671 - 23693539
Alignment:
| Q |
305 |
taaagcaatttaataaagaagcctgcagaattggtacttaactttctatattaaactatgaaacaaacatcaaaaagatgtgaacattagttttcgacag |
404 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||| ||| ||||||||| | ||| || || || | ||||||||||||||||| |||| | |
|
|
| T |
23693671 |
taaagcaatttaataaagaagcc----gaacgggtacttaaatttttatattaaatcacagaacgaaaattaacaggatgtgaacattagtttccgacgg |
23693576 |
T |
|
| Q |
405 |
acaataaaatgtcacatattattacaaatttcttaaa |
441 |
Q |
| |
|
||||| |||||| ||||||| ||||||||| ||||| |
|
|
| T |
23693575 |
acaatgaaatgtaacatattgatacaaattttttaaa |
23693539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 441
Target Start/End: Complemental strand, 23712111 - 23711979
Alignment:
| Q |
305 |
taaagcaatttaataaagaagcctgcagaattggtacttaactttctatattaaactatgaaacaaacatcaaaaagatgtgaacattagttttcgacag |
404 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||| ||| ||||||||| | ||| || || || | ||||||||||||||||| |||| | |
|
|
| T |
23712111 |
taaagcaatttaataaagaagcc----gaacgggtacttaaatttttatattaaatcacagaacgaaaattaacaggatgtgaacattagtttccgacgg |
23712016 |
T |
|
| Q |
405 |
acaataaaatgtcacatattattacaaatttcttaaa |
441 |
Q |
| |
|
||||| |||||| ||||||| ||||||||| ||||| |
|
|
| T |
23712015 |
acaatgaaatgtaacatattgatacaaattttttaaa |
23711979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 441
Target Start/End: Complemental strand, 23730567 - 23730435
Alignment:
| Q |
305 |
taaagcaatttaataaagaagcctgcagaattggtacttaactttctatattaaactatgaaacaaacatcaaaaagatgtgaacattagttttcgacag |
404 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||| ||| ||||||||| | ||| || || || | ||||||||||||||||| |||| | |
|
|
| T |
23730567 |
taaagcaatttaataaagaagcc----gaacgggtacttaaatttttatattaaatcacagaacgaaaattaacaggatgtgaacattagtttccgacgg |
23730472 |
T |
|
| Q |
405 |
acaataaaatgtcacatattattacaaatttcttaaa |
441 |
Q |
| |
|
||||| |||||| ||||||| ||||||||| ||||| |
|
|
| T |
23730471 |
acaatgaaatgtaacatattgatacaaattttttaaa |
23730435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 441
Target Start/End: Complemental strand, 23749022 - 23748890
Alignment:
| Q |
305 |
taaagcaatttaataaagaagcctgcagaattggtacttaactttctatattaaactatgaaacaaacatcaaaaagatgtgaacattagttttcgacag |
404 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||| ||| ||||||||| | ||| || || || | ||||||||||||||||| |||| | |
|
|
| T |
23749022 |
taaagcaatttaataaagaagcc----gaacgggtacttaaatttttatattaaatcacagaacgaaaattaacaggatgtgaacattagtttccgacgg |
23748927 |
T |
|
| Q |
405 |
acaataaaatgtcacatattattacaaatttcttaaa |
441 |
Q |
| |
|
||||| |||||| ||||||| ||||||||| ||||| |
|
|
| T |
23748926 |
acaatgaaatgtaacatattgatacaaattttttaaa |
23748890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 356
Target Start/End: Complemental strand, 23690187 - 23690136
Alignment:
| Q |
305 |
taaagcaatttaataaagaagcctgcagaattggtacttaactttctatatt |
356 |
Q |
| |
|
||||||||||||||| ||||||| || ||||||||||||||||| |||||| |
|
|
| T |
23690187 |
taaagcaatttaatacagaagccgacaaaattggtacttaactttttatatt |
23690136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 356
Target Start/End: Complemental strand, 24062424 - 24062373
Alignment:
| Q |
305 |
taaagcaatttaataaagaagcctgcagaattggtacttaactttctatatt |
356 |
Q |
| |
|
||||||||||||||| ||||||| || ||||||||||||||||| |||||| |
|
|
| T |
24062424 |
taaagcaatttaatacagaagccgacaaaattggtacttaactttttatatt |
24062373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University