View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_34 (Length: 456)
Name: NF1408_low_34
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_34 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 86 - 456
Target Start/End: Original strand, 37902796 - 37903166
Alignment:
| Q |
86 |
gcaaaatacctggggagttggtgatgtaggtgcaggatcaacaatagaggaacacatgtctttcatagccattgtgtgaagcgctgctgaagcatcacct |
185 |
Q |
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| T |
37902796 |
gcaaaatacctggggagttggtgatgtaggagcaggatcaacaatagaggaacacatgtctttcatagccattgtgtgaagcgctgctgaagcatcacct |
37902895 |
T |
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| Q |
186 |
ttctgctttgggtttgtagattggagaagattcaacagcagttctaatcctgaagatttagcagcatagtgattaaaaatactttctatgcactgccaga |
285 |
Q |
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| T |
37902896 |
ttctgctttgggtttgtagattggagaagattcaacagcagttctaatcctgaaaatttagcagcatagtgattaaaaatactttctatgcactgccaga |
37902995 |
T |
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| Q |
286 |
gagggggacaagaaaagtaaattttaaagtttgttaccattattgtcaataaatatagttttccgatcatcaggggaacataaatgtgcaagagcaagag |
385 |
Q |
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||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37902996 |
gagggggacaaaaaaaataaattttaaagtttgttaccattattgtcaataaatatagttttccgatcatcaggggaacataaatgtgcaagagcaagag |
37903095 |
T |
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| Q |
386 |
ctacacgtatttgaagatcattttccccagtgcgcataagatataacatgtgtttcagtacctgcaaaaga |
456 |
Q |
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| T |
37903096 |
ctacacgtatttgaagatccttttccccagtgcgcataagatataacatgtgtttcagtacctgcaaaaga |
37903166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 86 - 456
Target Start/End: Original strand, 37909307 - 37909677
Alignment:
| Q |
86 |
gcaaaatacctggggagttggtgatgtaggtgcaggatcaacaatagaggaacacatgtctttcatagccattgtgtgaagcgctgctgaagcatcacct |
185 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37909307 |
gcaaaatacctggggagttggtgatgtaggagcaggatcaacaatagaggaacacatgtctttcatagccattgtgtgaagcgctgctgaagcatcacct |
37909406 |
T |
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| Q |
186 |
ttctgctttgggtttgtagattggagaagattcaacagcagttctaatcctgaagatttagcagcatagtgattaaaaatactttctatgcactgccaga |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37909407 |
ttctgctttgggtttgtagattggagaagattcaacagcagttctaatcctgaaaatttagcagcatagtgattaaaaatactttctatgcactgccaga |
37909506 |
T |
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| Q |
286 |
gagggggacaagaaaagtaaattttaaagtttgttaccattattgtcaataaatatagttttccgatcatcaggggaacataaatgtgcaagagcaagag |
385 |
Q |
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||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37909507 |
gagggggacaaaaaaaataaattttaaagtttgttaccattattgtcaataaatatagttttccgatcatcaggggaacataaatgtgcaagagcaagag |
37909606 |
T |
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| Q |
386 |
ctacacgtatttgaagatcattttccccagtgcgcataagatataacatgtgtttcagtacctgcaaaaga |
456 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37909607 |
ctacacgtatttgaagatccttttccccagtgcgcataagatataacatgtgtttcagtacctgcaaaaga |
37909677 |
T |
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Back To:
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