View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_35 (Length: 456)
Name: NF1408_low_35
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 29 - 444
Target Start/End: Original strand, 40322910 - 40323325
Alignment:
| Q |
29 |
agttttgtgtgctgagttggaaccctatcttgtgatttgtgaattcgtccatctatttcgaatcatgatggtttgggttttaatttatcagtttcttata |
128 |
Q |
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| T |
40322910 |
agttttgtgtgcttagttggaaccctatcttgtgatttgtgaattcgtccatctatttcgaatcatgatggtttgggttttaatttatcagtttcttata |
40323009 |
T |
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| Q |
129 |
gaatatttgttagaatgttgaatatttactatgcaaactatgtttagataccatgatatatttttaaacattatttttgtatcaagtaaaagcttacttg |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40323010 |
gaatatttgttagaatgttgaatatttactatgcaaactatgtttagataccatgatatatttttaaacattatttttgtatcaagtaaaagcttacttg |
40323109 |
T |
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| Q |
229 |
ccgagtctgcaaatattccatgagttcacatagactctcgagtttaacaacatcactctagctgactttcttggaatcatgcgtagagtttaacaacatc |
328 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40323110 |
ccgagtctgcaaatattccacgagttcacatagactctcgagtttaacaacatcactctagctgactttcttggaatcatgcgtagagtttaacaacatc |
40323209 |
T |
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| Q |
329 |
tacaaatatttatgtttagatgcatgaagtccctcttcccatctgtgggagggatctggttacaccagtacaagactttaactctttcacaacacctctg |
428 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40323210 |
tacaaatatttatgtttagatgcatgacgtccctcttcccatctgtgggagggatctggttacaccagtacaagactttaactctttcacaacacctctg |
40323309 |
T |
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| Q |
429 |
catgggagttgatatt |
444 |
Q |
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|||||||||||||||| |
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| T |
40323310 |
catgggagttgatatt |
40323325 |
T |
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