View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1408_low_36 (Length: 454)

Name: NF1408_low_36
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1408_low_36
NF1408_low_36
[»] chr2 (5 HSPs)
chr2 (96-435)||(41469524-41469872)
chr2 (100-415)||(41476568-41476880)
chr2 (100-415)||(41483622-41483923)
chr2 (100-269)||(40750960-40751129)
chr2 (314-415)||(40750828-40750929)
[»] chr4 (4 HSPs)
chr4 (100-275)||(16413333-16413508)
chr4 (100-269)||(16408909-16409078)
chr4 (100-261)||(52471849-52472010)
chr4 (341-409)||(16409115-16409183)


Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 96 - 435
Target Start/End: Complemental strand, 41469872 - 41469524
Alignment:
Q  96 gacccttctgcagatccttttcacgtgacataagctcattcctccgagcttctagttgaagaatggctttttcataatccttcgacatgctctccagata 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41469872 gacccttctgcagatccttttcacgtgacataagctcattcctccgagcttctagttgaagaatggctttttcataatccttcgacatgctctccagata 41469773  T
Q  196 atcgcgttcaacctgctgtatcttgctgatttctaagggaacaatgggaaacagatttagctaccatgaaatataaaaaagtaagaaatcacataaacta 295  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41469772 atcgcgttcaacctgctgtaccttgctgatttctaagggaacaatgtgaaacagatttaactaccatgaaatataaaaaagtaagaaatcacataaacta 41469673  T
Q  296 c---------nnnnnnnnnntcattaaaaaatgcaacagaatgtaagctacaccaaaaggatatatataataataaaaaccagaatgtttcgcctctaaa 386  Q
    |                   |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41469672 caaaaaaaaaaaaaaaaaaatcattaaaaaatgcaacagaatgtaagctacaccgaaaggatatatataataataaaaaccagaatgtttcgcctctaaa 41469573  T
Q  387 tcaatgaaacggaataccaatatcaattatatatataacaatttacttt 435  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41469572 tcaatgaaacggaataccaatatcaattatatatataacaatttacttt 41469524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 100 - 415
Target Start/End: Complemental strand, 41476880 - 41476568
Alignment:
Q  100 cttctgcagatccttttcacgtgacataagctcattcctccgagcttctagttgaagaatggctttttcataatccttcgacatgctctccagataatcg 199  Q
    ||||||||||||||||||||| ||| |||| ||||||||||||| ||| ||||   |  | ||| |||||| ||||||||| |   ||||| |||| ||     
T  41476880 cttctgcagatccttttcacgggacttaagttcattcctccgagtttccagttcctgcctagctatttcatgatccttcgatactttctcctgatactca 41476781  T
Q  200 cgttcaacctgctgtatcttgctgatttctaagggaacaatgggaaacagatttagctaccatgaaatataaaaaagtaagaaatcacataaactacnnn 299  Q
    |||||||||||| | ||||||||||||||||| ||||||||| |||||||| | ||||||||  |||||| ||||| ||| |||||| ||  |||||       
T  41476780 cgttcaacctgccgcatcttgctgatttctaatggaacaatgtgaaacagactcagctaccacaaaatatcaaaaattaaaaaatcaaatcgactac--- 41476684  T
Q  300 nnnnnnntcattaaaaaatgcaacagaatg-taagctacaccaaaaggatatatataataataaaaaccagaatgtttcgcctctaaatcaatgaaacgg 398  Q
           |||||  |||||||| ||||||| ||||||| ||| | | || | ||||| |||||||||||||||||||| | ||||||||| ||||||| |    
T  41476683 -aacaaatcattccaaaatgcagcagaatgttaagctataccgagaagaaagatatattaataaaaaccagaatgttttggctctaaatccatgaaacag 41476585  T
Q  399 aataccaatatcaatta 415  Q
    ||||||||||| |||||    
T  41476584 aataccaatattaatta 41476568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 100 - 415
Target Start/End: Complemental strand, 41483923 - 41483622
Alignment:
Q  100 cttctgcagatccttttcacgtgacataagctcattcctccgagcttctagttgaagaatggctttttcataatccttcgacatgctctccagataatcg 199  Q
    ||||||||||||||| ||||| || |||||||| |||||||||||||| ||||  ||  |||||||||||| |||||| || |   ||||| | || ||     
T  41483923 cttctgcagatccttctcacgggaaataagctcgttcctccgagcttccagttccagcctggctttttcatgatccttagatactttctcctggtactct 41483824  T
Q  200 cgttcaacctgctgtatcttgctgatttctaagggaacaatgggaaacagatttagctaccatgaaatataaaaaagtaagaaatcacataaactacnnn 299  Q
    |||||||||||| | ||||||||||| ||||| | |||||    ||||||| | |||||||||||||||| |||||       |||| || ||||||       
T  41483823 cgttcaacctgccgcatcttgctgatctctaatgaaacaaaataaaacagactaagctaccatgaaatattaaaaa-------atcaaatcaactacaaa 41483731  T
Q  300 nnnnnnntcattaaaaaatgcaacagaatgtaagctacaccaaaaggatatatataataataaaaaccagaatgtttcgcctctaaatcaatgaaacgga 399  Q
           |||||  |||||| |||||| ||||||||||||||||| |||||||||| || |||||||||||||||||| |||||||||||| ||||| ||    
T  41483730 -------tcattccaaaatgtaacagactgtaagctacaccaaaatgatatatatagtagtaaaaaccagaatgtttcacctctaaatcaaagaaacaga 41483638  T
Q  400 ataccaatatcaatta 415  Q
    | |||||||| |||||    
T  41483637 acaccaatattaatta 41483622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 100 - 269
Target Start/End: Complemental strand, 40751129 - 40750960
Alignment:
Q  100 cttctgcagatccttttcacgtgacataagctcattcctccgagcttctagttgaagaatggctttttcataatccttcgacatgctctccagataatcg 199  Q
    |||||| |||||||| ||||| |||||||| ||||||||||||||||| ||||  ||  ||| |||||||| |||||| || |   ||||| |||| |||    
T  40751129 cttctgtagatccttctcacgggacataagttcattcctccgagcttccagttccagcctggatttttcatgatccttagatactttctcctgatactcg 40751030  T
Q  200 cgttcaacctgctgtatcttgctgatttctaagggaacaatgggaaacagatttagctaccatgaaatat 269  Q
    | |||||||||| | ||||||||||||||||| | ||||||  |||||||| | ||||||||||||||||    
T  40751029 cattcaacctgccgcatcttgctgatttctaatgaaacaatatgaaacagactcagctaccatgaaatat 40750960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 415
Target Start/End: Complemental strand, 40750929 - 40750828
Alignment:
Q  314 aaaatgcaacagaatgtaagctacaccaaaaggatatatataataataaaaaccagaatgtttcgcctctaaatcaatgaaacggaataccaatatcaat 413  Q
    ||||||||| ||||||||||||||||||||| ||||  | || || ||||||| | | |||||| |||||||||| |||| |||||||||| |||| |||    
T  40750929 aaaatgcaatagaatgtaagctacaccaaaatgataggtgtagtagtaaaaacgatagtgtttcacctctaaatcgatgagacggaataccgatattaat 40750830  T
Q  414 ta 415  Q
    ||    
T  40750829 ta 40750828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 3e-49; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 100 - 275
Target Start/End: Original strand, 16413333 - 16413508
Alignment:
Q  100 cttctgcagatccttttcacgtgacataagctcattcctccgagcttctagttgaagaatggctttttcataatccttcgacatgctctccagataatcg 199  Q
    |||||||||||||||||| ||| ||||||| ||||||||| | ||||| ||||  || ||||||||||| | ||||||||  |||||||| |||||||||    
T  16413333 cttctgcagatccttttctcgtaacataagttcattcctcagcgcttccagttccagtatggctttttcttgatccttcgttatgctctcaagataatcg 16413432  T
Q  200 cgttcaacctgctgtatcttgctgatttctaagggaacaatgggaaacagatttagctaccatgaaatataaaaaa 275  Q
    |||||||||||| | ||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||    
T  16413433 cgttcaacctgccgcatcttgctgatttctaacggaacaatgtgaaacagacttagctaccatgaaatataaaaaa 16413508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 100 - 269
Target Start/End: Original strand, 16408909 - 16409078
Alignment:
Q  100 cttctgcagatccttttcacgtgacataagctcattcctccgagcttctagttgaagaatggctttttcataatccttcgacatgctctccagataatcg 199  Q
    ||||||||||||||||||||| ||||||||||||||  ||| |||||||||||  ||  |||||||||||| |||||| || ||  ||||| |||| |||    
T  16408909 cttctgcagatccttttcacgggacataagctcatttttccaagcttctagttccagcctggctttttcatgatccttggatattttctcctgatactcg 16409008  T
Q  200 cgttcaacctgctgtatcttgctgatttctaagggaacaatgggaaacagatttagctaccatgaaatat 269  Q
    |||||||||||| | ||||||||||||||||| ||||||||  ||||||||   || |||||||||||||    
T  16409009 cgttcaacctgccgcatcttgctgatttctaatggaacaatatgaaacagacacagttaccatgaaatat 16409078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 100 - 261
Target Start/End: Complemental strand, 52472010 - 52471849
Alignment:
Q  100 cttctgcagatccttttcacgtgacataagctcattcctccgagcttctagttgaagaatggctttttcataatccttcgacatgctctccagataatcg 199  Q
    ||||||||||||| ||||||| |||||||| |||||||||| |||||| ||||  |  ||||||||||||| |||||| |||||  | |||||||| | |    
T  52472010 cttctgcagatccatttcacgggacataagttcattcctcctagcttccagttccaacatggctttttcatgatccttagacatattttccagatagttg 52471911  T
Q  200 cgttcaacctgctgtatcttgctgatttctaagggaacaatgggaaacagatttagctacca 261  Q
    |||||||| ||| | ||||||||||||||||| ||||||||| |||||| | | ||||||||    
T  52471910 cgttcaacttgccgcatcttgctgatttctaatggaacaatgtgaaacaaactaagctacca 52471849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 341 - 409
Target Start/End: Original strand, 16409115 - 16409183
Alignment:
Q  341 aaaaggatatatataataataaaaaccagaatgtttcgcctctaaatcaatgaaacggaataccaatat 409  Q
    ||||||||| |||||| ||||||||| |||||||||| |||||||||||| ||||| |||||| |||||    
T  16409115 aaaaggatacatataacaataaaaacaagaatgtttcacctctaaatcaaagaaacagaatacaaatat 16409183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University