View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_38 (Length: 452)
Name: NF1408_low_38
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_38 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 7 - 452
Target Start/End: Complemental strand, 1481455 - 1481011
Alignment:
| Q |
7 |
tccaacaatatttaaaaacaaaaagaatagatgatattgttacatgattaccatttcttttcnnnnnnngctaatacatgtttaacatttctaaagatac |
106 |
Q |
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| T |
1481455 |
tccaacaacatttaaaaacaaaaagaatagatgatattgttacatgattaccatttcttttctttttttgctaatacatgtttaacatttctaaagatac |
1481356 |
T |
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| Q |
107 |
ttttaaattaaaataatataggataagttcactcaatcaaacttatatcaaagtaatatagaatttattagttcataaattagaattttattaataactt |
206 |
Q |
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| T |
1481355 |
ttttaaattaaaataatataggataagttcactcaatcaaacttatatcaaagtaatatagaatttattagttcataaattagaattttattaatatctt |
1481256 |
T |
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| Q |
207 |
cgaaactcggcatcacattgagaatattctacctagtttctatgaagggttgtagacattccacactatcatttgccataagatcacatacaaagtattg |
306 |
Q |
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| T |
1481255 |
cgaaactcggcatcgcattgagaatattttacctagtttctatgaagggttgtagacattccacactatcatttgccataagatcacatacaaagtattg |
1481156 |
T |
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| Q |
307 |
agtttagtacataggaacaactccaatgagatggacatcatcacatactcaatactccatagtacataacacatacaactcaagaaaggctaaaagtctt |
406 |
Q |
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| T |
1481155 |
agtttagtacataggaacaactccaatg-gagctacattatcacatacttaacactccgtagtacataacacatacaactcaagaaaggctaaaagtctt |
1481057 |
T |
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| Q |
407 |
ttttcgcgagctttcttatactaaactcaagaaaggctaaaagtct |
452 |
Q |
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| T |
1481056 |
ttttcgcgagctttcttattctaaactcaagaaaggctaaaagtct |
1481011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 383 - 431
Target Start/End: Complemental strand, 1481033 - 1480984
Alignment:
| Q |
383 |
aactcaagaaaggctaaaagtct-tttttcgcgagctttcttatactaaa |
431 |
Q |
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| T |
1481033 |
aactcaagaaaggctaaaagtctgtttttcacgagctttcttatactaaa |
1480984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 247 - 302
Target Start/End: Complemental strand, 7314435 - 7314380
Alignment:
| Q |
247 |
tatgaagggttgtagacattccacactatcatttgccataagatcacatacaaagt |
302 |
Q |
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| T |
7314435 |
tatgaagggttgtagaaattccacactatcatttgctcaaagatcacatacaaagt |
7314380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 7314550 - 7314516
Alignment:
| Q |
131 |
aagttcactcaatcaaacttatatcaaagtaatat |
165 |
Q |
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| T |
7314550 |
aagttcactcaatcaaacttatataaaagtaatat |
7314516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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