View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1408_low_39 (Length: 450)

Name: NF1408_low_39
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1408_low_39
NF1408_low_39
[»] chr7 (4 HSPs)
chr7 (30-435)||(16262311-16262702)
chr7 (92-167)||(26909702-26909776)
chr7 (125-155)||(11672999-11673029)
chr7 (125-153)||(7850485-7850513)
[»] chr3 (5 HSPs)
chr3 (179-435)||(11394052-11394308)
chr3 (179-435)||(46233725-46233983)
chr3 (30-193)||(11394327-11394490)
chr3 (138-193)||(46233651-46233706)
chr3 (30-85)||(46233599-46233654)
[»] chr2 (3 HSPs)
chr2 (179-435)||(9208604-9208860)
chr2 (138-193)||(9208879-9208934)
chr2 (30-85)||(9208931-9208986)
[»] chr1 (2 HSPs)
chr1 (179-435)||(32440413-32440669)
chr1 (30-193)||(32440231-32440394)
[»] scaffold0317 (1 HSPs)
scaffold0317 (125-164)||(19444-19483)
[»] chr5 (3 HSPs)
chr5 (203-272)||(21592442-21592511)
chr5 (203-272)||(21596559-21596628)
chr5 (125-153)||(26852288-26852316)
[»] scaffold0093 (1 HSPs)
scaffold0093 (123-153)||(44086-44116)
[»] chr4 (1 HSPs)
chr4 (125-187)||(55877103-55877165)
[»] chr6 (1 HSPs)
chr6 (138-186)||(25197957-25198005)


Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 30 - 435
Target Start/End: Original strand, 16262311 - 16262702
Alignment:
Q  30 tgatatgaattaagattgaagatgatgctgaaaagggaaaacccataattggaagacccattgatgaagagaaaagcgaaagagaatatcaacgattctg 129  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  16262311 tgataggaattaagattgaagatgatgctgaaaagggaaaacccagaattggaagacccattgatgaagagaaaagagagagagaatatcaacgattctg 16262410  T
Q  130 atttgagcaagaagaaagtgttgggttggaatcaaagacagaagcggcggagctgaaaggcttgagtgagaatttgtggaagaggaaaagagagggagga 229  Q
    |||||||||| |||||||||||||||||||||||||  ||| ||||||||||||||||||||||  ||||              ||||||||||||||||    
T  16262411 atttgagcaaaaagaaagtgttgggttggaatcaaaatcagcagcggcggagctgaaaggcttggttgag--------------gaaaagagagggagga 16262496  T
Q  230 gagaaagcgacgatgaagagggtgggttggagaggttgttgttttacgatatgcattacattggtaaccaaaacattggaattaacaatgcaaatattgg 329  Q
    |||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||     
T  16262497 gagaaagcaacaatgaagagggtgggttggagaggttgttgttttactatatgcattacattggtaaccaaagcattggaattaacaatgcaaacattga 16262596  T
Q  330 aactatgcacgcttttcacaaagtttgatataaagggctggatcaatccaagggccataattagttggcgcctaaaactttaggattagggctttggagt 429  Q
    ||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16262597 aacaatgcacgcgtttcacaaagtttgatataaacggctggatcaatccaagggccataattagttggcgcctaaaactttaggattagggttttggagt 16262696  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 92 - 167
Target Start/End: Original strand, 26909702 - 26909776
Alignment:
Q  92 gatgaagagaaaagcgaaagagaatatcaacgattctgatttgagcaagaagaaagtgttgggttggaatcaaaga 167  Q
    |||||||||||||  || |||||| | || ||| ||||||||||||||||| |||||||||||| |||||||||||    
T  26909702 gatgaagagaaaat-gagagagaagagcagcgagtctgatttgagcaagaaaaaagtgttgggtcggaatcaaaga 26909776  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 155
Target Start/End: Complemental strand, 11673029 - 11672999
Alignment:
Q  125 ttctgatttgagcaagaagaaagtgttgggt 155  Q
    |||||||||||||||||||||||||||||||    
T  11673029 ttctgatttgagcaagaagaaagtgttgggt 11672999  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 153
Target Start/End: Original strand, 7850485 - 7850513
Alignment:
Q  125 ttctgatttgagcaagaagaaagtgttgg 153  Q
    |||||||||||||||||||||||||||||    
T  7850485 ttctgatttgagcaagaagaaagtgttgg 7850513  T

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Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 179 - 435
Target Start/End: Complemental strand, 11394308 - 11394052
Alignment:
Q  179 gagctgaaaggcttgagtgagaatttgtggaagaggaaaagagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgttttacga 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11394308 gagctgaaaggcttgagtgagaatttgtggaagaggaaaagagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgttttacta 11394209  T
Q  279 tatgcattacattggtaaccaaaacattggaattaacaatgcaaatattggaactatgcacgcttttcacaaagtttgatataaagggctggatcaatcc 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11394208 tatgcattacattggtaaccaaaacattggaattaacaatgcaaacattggaactatgcacgcttttcacaaagtttgatataaagggctggatcaatcc 11394109  T
Q  379 aagggccataattagttggcgcctaaaactttaggattagggctttggagtgataat 435  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11394108 aagggccataattagttggcgcctaaaactttaggattagggttttggagtgataat 11394052  T

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Target: chr3; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 179 - 435
Target Start/End: Original strand, 46233725 - 46233983
Alignment:
Q  179 gagctgaaaggcttgagtgaga--atttgtggaagaggaaaagagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgttttac 276  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46233725 gagctgaaaggcttgagtgagagaatttgtggaagaggaaaagagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgttttac 46233824  T
Q  277 gatatgcattacattggtaaccaaaacattggaattaacaatgcaaatattggaactatgcacgcttttcacaaagtttgatataaagggctggatcaat 376  Q
     |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  46233825 tatatgcattacattggtaaccaaagcattggaattaacaatgcaaacattggaactatgcacgcgtttcacaaagtttgatataaagggctggatcaat 46233924  T
Q  377 ccaagggccataattagttggcgcctaaaactttaggattagggctttggagtgataat 435  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  46233925 ccaagggccataattagttggcgcctaaaactttaggattagggttttggagtgataat 46233983  T

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Target: chr3; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 30 - 193
Target Start/End: Complemental strand, 11394490 - 11394327
Alignment:
Q  30 tgatatgaattaagattgaagatgatgctgaaaagggaaaacccataattggaagacccattgatgaagagaaaagcgaaagagaatatcaacgattctg 129  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11394490 tgataggaattaagattgaagatgatgctgaaaagggaaaacccataattggaagacccattgatgaagagaaaagagaaagagaatatcaacgattctg 11394391  T
Q  130 atttgagcaagaagaaagtgttgggttggaatcaaagacagaagcggcggagctgaaaggcttg 193  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11394390 atttgagcaagaagaaagtgttgggttggaatcaaagacagcagcggcggagctgaaaggcttg 11394327  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 46233651 - 46233706
Alignment:
Q  138 aagaagaaagtgttgggttggaatcaaagacagaagcggcggagctgaaaggcttg 193  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  46233651 aagaagaaagtgttgggttggaatcaaagacagcagcggcggagctgaaaggcttg 46233706  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 46233599 - 46233654
Alignment:
Q  30 tgatatgaattaagattgaagatgatgctgaaaagggaaaacccataattggaaga 85  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  46233599 tgataggaattaagattgaagatgatgttgaaaagggaaaacccagaattggaaga 46233654  T

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Target: chr2 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 179 - 435
Target Start/End: Complemental strand, 9208860 - 9208604
Alignment:
Q  179 gagctgaaaggcttgagtgagaatttgtggaagaggaaaagagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgttttacga 278  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9208860 gagctaaaaggcttgagtgagaatttgtggaagaggaaaagagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgttttacta 9208761  T
Q  279 tatgcattacattggtaaccaaaacattggaattaacaatgcaaatattggaactatgcacgcttttcacaaagtttgatataaagggctggatcaatcc 378  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9208760 tatgcattacattggtaaccaaagcattggaattaacaatgcaaacattggaactatgcacgcgtttcacaaagtttgatataaagggctggatcaatcc 9208661  T
Q  379 aagggccataattagttggcgcctaaaactttaggattagggctttggagtgataat 435  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9208660 aagggccataattagttggcgcctaaaactttaggattagggttttggagtgataat 9208604  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 9208934 - 9208879
Alignment:
Q  138 aagaagaaagtgttgggttggaatcaaagacagaagcggcggagctgaaaggcttg 193  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  9208934 aagaagaaagtgttgggttggaatcaaagacagcagcggcggagctaaaaggcttg 9208879  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 9208986 - 9208931
Alignment:
Q  30 tgatatgaattaagattgaagatgatgctgaaaagggaaaacccataattggaaga 85  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9208986 tgataggaattaagattgaagatgatgctgaaaagggaaaacccaaaattggaaga 9208931  T

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Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 179 - 435
Target Start/End: Original strand, 32440413 - 32440669
Alignment:
Q  179 gagctgaaaggcttgagtgagaatttgtggaagaggaaaagagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgttttacga 278  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  32440413 gagctgaaaggcttgggtgagaatttgtggaagaggaaaagagagggaggagagaaagcgacgatgaagagggtgggtcggagaggttgttgttttacta 32440512  T
Q  279 tatgcattacattggtaaccaaaacattggaattaacaatgcaaatattggaactatgcacgcttttcacaaagtttgatataaagggctggatcaatcc 378  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||| | ||||||||||||||||||||||||||||||||||||    
T  32440513 tatgcattacattggtaaccaaagcattggaattaacaatgcaaacattgaaactatgcacacgtttcacaaagtttgatataaagggctggatcaatcc 32440612  T
Q  379 aagggccataattagttggcgcctaaaactttaggattagggctttggagtgataat 435  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32440613 aagggccataattagttggcgcctaaaactttaggattagggttttggagtgataat 32440669  T

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Target: chr1; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 30 - 193
Target Start/End: Original strand, 32440231 - 32440394
Alignment:
Q  30 tgatatgaattaagattgaagatgatgctgaaaagggaaaacccataattggaagacccattgatgaagagaaaagcgaaagagaatatcaacgattctg 129  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  32440231 tgataggaattaagattgaagatgatgctgaaaagggaaaacccagaattggaagacccattgatgaagagaaaagagagagagaatatcaacgattctg 32440330  T
Q  130 atttgagcaagaagaaagtgttgggttggaatcaaagacagaagcggcggagctgaaaggcttg 193  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  32440331 atttgagcaagaagaaagtgttgggttggaatcaaagacagcagcggcggagctaaaaggcttg 32440394  T

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Target: scaffold0317 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 125 - 164
Target Start/End: Original strand, 19444 - 19483
Alignment:
Q  125 ttctgatttgagcaagaagaaagtgttgggttggaatcaa 164  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  19444 ttctgatttgagcaagaagaaagtgttgggtcggaatcaa 19483  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 21592511 - 21592442
Alignment:
Q  203 ttgtggaagaggaaaagagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgtt 272  Q
    |||||||| ||| | |||||||||| ||||| ||||| ||||| ||| ||||||| ||||||||||||||    
T  21592511 ttgtggaaaagggagagagagggagaagagatagcgatgatgaggagtgtgggtttgagaggttgttgtt 21592442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 21596628 - 21596559
Alignment:
Q  203 ttgtggaagaggaaaagagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgtt 272  Q
    |||||||| ||| | |||||||||| ||||| ||||| ||||| ||| ||||||| ||||||||||||||    
T  21596628 ttgtggaaaagggagagagagggagaagagatagcgatgatgaggagtgtgggtttgagaggttgttgtt 21596559  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 153
Target Start/End: Complemental strand, 26852316 - 26852288
Alignment:
Q  125 ttctgatttgagcaagaagaaagtgttgg 153  Q
    |||||||||||||||||||||||||||||    
T  26852316 ttctgatttgagcaagaagaaagtgttgg 26852288  T

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Target: scaffold0093 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 153
Target Start/End: Complemental strand, 44116 - 44086
Alignment:
Q  123 gattctgatttgagcaagaagaaagtgttgg 153  Q
    |||||||||||||||||||||||||||||||    
T  44116 gattctgatttgagcaagaagaaagtgttgg 44086  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 55877165 - 55877103
Alignment:
Q  125 ttctgatttgagcaagaagaaagtgttgggttggaatcaaagacagaagcggcggagctgaaa 187  Q
    |||| |||||||||||||||||||||||||| ||||||  |||| ||  |||||||| |||||    
T  55877165 ttctaatttgagcaagaagaaagtgttgggtcggaatcggagacggagtcggcggagatgaaa 55877103  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 25198005 - 25197957
Alignment:
Q  138 aagaagaaagtgttgggttggaatcaaagacagaagcggcggagctgaa 186  Q
    |||||||||||||||||| ||||||| |||| | ||| |||||||||||    
T  25198005 aagaagaaagtgttgggtcggaatcagagactgcagcagcggagctgaa 25197957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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