View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_4 (Length: 647)
Name: NF1408_low_4
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 506; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 100 - 634
Target Start/End: Original strand, 36676545 - 36677079
Alignment:
| Q |
100 |
cttatgacttcactttccaaaggatgcaaccatttggaaagcctcccatttgacatgtatgcatatgccaaaacctgttcctttccttcaatggagaacc |
199 |
Q |
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| T |
36676545 |
cttatgacttcactttccaaaggatgcaaccatttggaaagcctcccatttgacatgtatgcatatgccaaaacctgttcctttccttcaatggagaacc |
36676644 |
T |
|
| Q |
200 |
caagcatgggaactatatttttgtgtctgtacctactcataatcgttgtttctaaaaggatctgccttttaaacaaatgagagtcgaatagtctcttaat |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676645 |
caagcatgggaactatatttttgtgtctgtacctactcataatcgttgtttctaaaaggatctgccttttaaacaaatgagagtcgaatagtctcttaac |
36676744 |
T |
|
| Q |
300 |
agctagtaattgaccattaggcagaaatccttggtacatcattcccatctttcctaccccaatggcattgtccacagcaaaacaatcggttgcgtcacgc |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676745 |
agctagtaattgaccattaggcagaaatccttggtacatcattcccatctttcctaccccaatggcattgtccacagcaaaacaatcggttgcgtcacgc |
36676844 |
T |
|
| Q |
400 |
agttcttccaaccatattgttgaatttagtctctccattagtatagagatctgtggatgcatgtgtaattgttttttacaacagacaatatatactgatt |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676845 |
agttcttccaaccatattgttgaatttagtctctccattagtatagagatctgtggatgcatgtgtaattgttttttacaacagacaatatatactgatt |
36676944 |
T |
|
| Q |
500 |
tacctnnnnnnncaattcaaaacaagaagtgtttaaaaagatagaactatttaaagaagagaatgagtacctctttggtttctttgtgtacaatccacga |
599 |
Q |
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| T |
36676945 |
tacctaaaaaaacaattcaaaacaagaagtgtttaaaaagatagaactatttaaagaacagaatgagtacctctttggtttctttgtgtacaatccacga |
36677044 |
T |
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| Q |
600 |
atgtaacaattggtgcatctgatcagctaccatct |
634 |
Q |
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| T |
36677045 |
atgtaacaattggtgcatctgatcagctaccatct |
36677079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 100 - 461
Target Start/End: Original strand, 36673790 - 36674151
Alignment:
| Q |
100 |
cttatgacttcactttccaaaggatgcaaccatttggaaagcctcccatttgacatgtatgcatatgccaaaacctgttcctttccttcaatggagaacc |
199 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||| |||||| |
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| T |
36673790 |
cttatgacttcactttccgaaggatgcaaccatttggaaagccttccatttgacatgtatgcatatgctaaaacctgttcctttcctttaatgcagaacc |
36673889 |
T |
|
| Q |
200 |
caagcatgggaactatatttttgtgtctgtacctactcataatcgttgtttctaaaaggatctgccttttaaacaaatgagagtcgaatagtctcttaat |
299 |
Q |
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|||||| ||||||||||||||| ||||||||| ||| || |||||||||||| ||||||| |||||||||||| | ||||||| |||| ||||||||| |
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| T |
36673890 |
caagcaggggaactatatttttttgtctgtacttacacaaaatcgttgtttccaaaaggaactgccttttaaatagccgagagtcaaatattctcttaat |
36673989 |
T |
|
| Q |
300 |
agctagtaattgaccattaggcagaaatccttggtacatcattcccatctttcctaccccaatggcattgtccacagcaaaacaatcggttgcgtcacgc |
399 |
Q |
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||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||| | |
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| T |
36673990 |
agccagtaactgaccattaggaagaaatccttggtacatcattcccatctttcctaccccaatggcattgtcgacagcgaaacaatcagttgcgtcacac |
36674089 |
T |
|
| Q |
400 |
agttcttccaaccatattgttgaatttagtctctccattagtatagagatctgtggatgcat |
461 |
Q |
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||||| ||||||||||||||| || | ||||||||||||||||||| |||||||| |||||| |
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| T |
36674090 |
agttcatccaaccatattgttaaagtcagtctctccattagtatagtgatctgtgaatgcat |
36674151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 103 - 423
Target Start/End: Original strand, 36684221 - 36684541
Alignment:
| Q |
103 |
atgacttcactttccaaaggatgcaaccatttggaaagcctcccatttgacatgtatgcatatgccaaaacctgttcctttccttcaatggagaacccaa |
202 |
Q |
| |
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||||||||||||| |||||| | |||||||||||||||||| ||||||||||||||| |||||||||||| | |||||||||||||||| |||| |||| |
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| T |
36684221 |
atgacttcacttttcaaagggtacaaccatttggaaagccttccatttgacatgtattcatatgccaaaagcctttcctttccttcaatgcagaatccaa |
36684320 |
T |
|
| Q |
203 |
gcatgggaactatatttttgtgtctgtacctactcataatcgttgtttctaaaaggatctgccttttaaacaaatgagagtcgaatagtctcttaatagc |
302 |
Q |
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||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||| ||| | | || ||| |||||||||||| || |
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| T |
36684321 |
gcatgggaactatatttttatgtctgtacctactcataatagttgtttctaaaaggaactgcctttcaaaaagacgatagttagatagtctcttaacggc |
36684420 |
T |
|
| Q |
303 |
tagtaattgaccattaggcagaaatccttggtacatcattcccatctttcctaccccaatggcattgtccacagcaaaacaatcggttgcgtcacgcagt |
402 |
Q |
| |
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|||||| |||||||| || ||| ||| || |||||||||||||||||||| ||||||||||| ||||| | ||||||||| ||||||| ||| || ||| |
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| T |
36684421 |
tagtaactgaccatttggtagatttccctgatacatcattcccatctttcccaccccaatggcgttgtctatagcaaaacagtcggttgtgtcccggagt |
36684520 |
T |
|
| Q |
403 |
tcttccaaccatattgttgaa |
423 |
Q |
| |
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||||| ||||||||||||||| |
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|
| T |
36684521 |
tcttctaaccatattgttgaa |
36684541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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