View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1408_low_40 (Length: 448)

Name: NF1408_low_40
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1408_low_40
NF1408_low_40
[»] chr3 (28 HSPs)
chr3 (32-440)||(54861463-54861871)
chr3 (42-277)||(25568445-25568682)
chr3 (42-191)||(51917828-51917977)
chr3 (29-112)||(662661-662744)
chr3 (29-213)||(39225010-39225198)
chr3 (49-105)||(13769384-13769440)
chr3 (49-105)||(24860153-24860209)
chr3 (49-105)||(41380679-41380735)
chr3 (49-105)||(43101464-43101520)
chr3 (49-105)||(45443235-45443291)
chr3 (49-109)||(50203946-50204006)
chr3 (49-105)||(54368994-54369050)
chr3 (44-199)||(35035050-35035205)
chr3 (29-114)||(34250436-34250521)
chr3 (49-105)||(4255465-4255521)
chr3 (49-105)||(4256189-4256245)
chr3 (29-105)||(14170092-14170168)
chr3 (53-105)||(44573285-44573337)
chr3 (53-104)||(44573914-44573965)
chr3 (161-230)||(35018507-35018577)
chr3 (49-105)||(3985728-3985784)
chr3 (53-105)||(27219288-27219340)
chr3 (49-105)||(34715548-34715604)
chr3 (50-105)||(48685410-48685466)
chr3 (327-369)||(51917802-51917844)
chr3 (161-226)||(30326938-30327003)
chr3 (47-104)||(46139185-46139242)
chr3 (53-105)||(47833755-47833806)
[»] chr1 (47 HSPs)
chr1 (29-369)||(19810837-19811180)
chr1 (43-171)||(34626801-34626929)
chr1 (29-213)||(19810683-19810866)
chr1 (29-150)||(18998646-18998767)
chr1 (42-213)||(41590214-41590384)
chr1 (29-122)||(33248406-33248499)
chr1 (29-122)||(33268578-33268671)
chr1 (67-285)||(41590452-41590663)
chr1 (54-200)||(12410365-12410512)
chr1 (29-143)||(6868068-6868182)
chr1 (49-105)||(51515669-51515726)
chr1 (85-213)||(19809943-19810070)
chr1 (49-105)||(31305666-31305722)
chr1 (42-105)||(40566359-40566422)
chr1 (58-243)||(18998357-18998543)
chr1 (31-105)||(19459660-19459734)
chr1 (42-87)||(14623155-14623200)
chr1 (45-213)||(17557708-17557874)
chr1 (49-102)||(20735477-20735530)
chr1 (45-105)||(2697424-2697484)
chr1 (49-105)||(8520186-8520242)
chr1 (49-105)||(33879871-33879927)
chr1 (49-105)||(33964328-33964384)
chr1 (49-105)||(45264618-45264674)
chr1 (49-108)||(15013480-15013539)
chr1 (64-127)||(51188885-51188948)
chr1 (161-243)||(40571594-40571675)
chr1 (163-212)||(10239500-10239549)
chr1 (53-102)||(43423238-43423287)
chr1 (161-221)||(347110-347170)
chr1 (57-152)||(12581389-12581485)
chr1 (53-105)||(17419746-17419798)
chr1 (53-105)||(19937136-19937188)
chr1 (174-229)||(40566046-40566102)
chr1 (29-147)||(7907895-7908014)
chr1 (174-213)||(21641405-21641444)
chr1 (49-83)||(8520350-8520384)
chr1 (196-230)||(40188675-40188709)
chr1 (183-224)||(1306057-1306098)
chr1 (60-105)||(4022218-4022263)
chr1 (161-214)||(7525054-7525107)
chr1 (201-230)||(9632291-9632320)
chr1 (175-224)||(11584349-11584398)
chr1 (44-93)||(13978535-13978584)
chr1 (29-69)||(11636199-11636239)
chr1 (327-371)||(19811149-19811193)
chr1 (202-230)||(27829719-27829747)
[»] chr8 (30 HSPs)
chr8 (42-230)||(30590396-30590584)
chr8 (29-151)||(38887036-38887158)
chr8 (42-109)||(44933170-44933237)
chr8 (49-213)||(26642542-26642706)
chr8 (29-192)||(34529922-34530085)
chr8 (49-115)||(25971381-25971447)
chr8 (44-105)||(28488425-28488486)
chr8 (49-105)||(20298609-20298665)
chr8 (49-105)||(21085241-21085297)
chr8 (49-145)||(26639066-26639162)
chr8 (69-154)||(16213180-16213265)
chr8 (49-105)||(23027598-23027654)
chr8 (49-105)||(23027921-23027977)
chr8 (49-105)||(31766956-31767012)
chr8 (49-105)||(39590653-39590708)
chr8 (49-99)||(3184002-3184052)
chr8 (53-105)||(15157041-15157093)
chr8 (53-105)||(18905815-18905867)
chr8 (53-105)||(36997125-36997177)
chr8 (301-371)||(30590343-30590414)
chr8 (51-105)||(18900827-18900881)
chr8 (161-239)||(29053703-29053781)
chr8 (49-83)||(40754399-40754433)
chr8 (53-105)||(21653285-21653338)
chr8 (53-105)||(21653762-21653815)
chr8 (207-281)||(25971171-25971247)
chr8 (161-218)||(30014320-30014376)
chr8 (161-213)||(5692901-5692953)
chr8 (49-105)||(22277479-22277535)
chr8 (43-87)||(30005574-30005618)
[»] chr5 (25 HSPs)
chr5 (44-367)||(31973267-31973588)
chr5 (29-199)||(4796293-4796463)
chr5 (30-212)||(16275178-16275359)
chr5 (161-230)||(15844493-15844562)
chr5 (29-105)||(31973218-31973294)
chr5 (29-105)||(15844317-15844393)
chr5 (49-105)||(27760346-27760402)
chr5 (53-111)||(20811413-20811471)
chr5 (52-105)||(1028186-1028239)
chr5 (49-105)||(873789-873845)
chr5 (53-105)||(13843656-13843708)
chr5 (53-105)||(13843972-13844024)
chr5 (49-105)||(27760030-27760086)
chr5 (49-105)||(28010209-28010265)
chr5 (53-111)||(20837768-20837826)
chr5 (184-242)||(40261034-40261092)
chr5 (49-105)||(17016186-17016242)
chr5 (49-105)||(24918119-24918175)
chr5 (49-105)||(24994027-24994083)
chr5 (49-105)||(28009890-28009946)
chr5 (49-105)||(37995727-37995783)
chr5 (174-213)||(22198986-22199025)
chr5 (44-114)||(904837-904907)
chr5 (45-83)||(17435353-17435391)
chr5 (49-101)||(28132085-28132137)
[»] chr7 (37 HSPs)
chr7 (29-240)||(39079899-39080110)
chr7 (42-206)||(30610800-30610962)
chr7 (60-213)||(16015394-16015547)
chr7 (33-152)||(422707-422826)
chr7 (29-156)||(12840614-12840741)
chr7 (29-239)||(16015680-16015889)
chr7 (60-213)||(14595866-14596019)
chr7 (45-150)||(41389257-41389362)
chr7 (42-214)||(41387478-41387650)
chr7 (29-103)||(39079724-39079798)
chr7 (42-213)||(25589056-25589226)
chr7 (29-239)||(14596152-14596361)
chr7 (69-229)||(21033799-21033960)
chr7 (54-150)||(46870273-46870370)
chr7 (43-105)||(41709967-41710029)
chr7 (49-105)||(257360-257416)
chr7 (49-105)||(43167986-43168042)
chr7 (29-105)||(46753062-46753138)
chr7 (29-147)||(28359018-28359137)
chr7 (50-105)||(28909988-28910043)
chr7 (49-192)||(32000772-32000915)
chr7 (49-199)||(10406585-10406735)
chr7 (29-147)||(23721078-23721196)
chr7 (49-105)||(1661284-1661340)
chr7 (49-105)||(1663698-1663753)
chr7 (49-89)||(14092010-14092050)
chr7 (49-89)||(14402028-14402068)
chr7 (49-105)||(41670823-41670879)
chr7 (42-101)||(3973108-3973167)
chr7 (31-105)||(10193469-10193543)
chr7 (49-109)||(29780102-29780162)
chr7 (49-105)||(41670539-41670594)
chr7 (53-104)||(40121712-40121763)
chr7 (161-230)||(24965957-24966026)
chr7 (29-105)||(12305149-12305225)
chr7 (161-217)||(21048690-21048746)
chr7 (161-205)||(27820913-27820957)
[»] chr6 (27 HSPs)
chr6 (70-371)||(1206002-1206307)
chr6 (29-371)||(1205688-1206033)
chr6 (42-104)||(130761-130824)
chr6 (49-105)||(9602080-9602136)
chr6 (50-186)||(18286842-18286977)
chr6 (49-177)||(1205570-1205699)
chr6 (49-105)||(10418431-10418487)
chr6 (49-105)||(24055202-24055258)
chr6 (50-105)||(1408967-1409022)
chr6 (49-105)||(19054448-19054504)
chr6 (49-105)||(21043874-21043930)
chr6 (49-105)||(21067150-21067206)
chr6 (49-105)||(21088941-21088997)
chr6 (50-109)||(17096787-17096846)
chr6 (44-105)||(31966-32027)
chr6 (49-102)||(9156197-9156250)
chr6 (49-105)||(1744935-1744991)
chr6 (44-100)||(9216785-9216841)
chr6 (49-105)||(10733531-10733587)
chr6 (49-105)||(12134576-12134632)
chr6 (49-105)||(32215863-32215919)
chr6 (49-104)||(9237114-9237169)
chr6 (54-109)||(12308580-12308635)
chr6 (42-83)||(15544604-15544645)
chr6 (161-230)||(19385574-19385642)
chr6 (49-105)||(8143973-8144028)
chr6 (53-105)||(19753697-19753749)
[»] chr4 (44 HSPs)
chr4 (42-213)||(30490939-30491107)
chr4 (44-205)||(52043071-52043232)
chr4 (42-199)||(48046304-48046462)
chr4 (29-105)||(26942680-26942756)
chr4 (49-199)||(23311469-23311618)
chr4 (45-201)||(26942869-26943024)
chr4 (50-243)||(54595329-54595525)
chr4 (42-101)||(26942469-26942528)
chr4 (165-230)||(17912812-17912877)
chr4 (49-105)||(15665108-15665164)
chr4 (49-105)||(45427345-45427401)
chr4 (49-105)||(53738301-53738357)
chr4 (44-230)||(3137604-3137787)
chr4 (29-111)||(46332620-46332702)
chr4 (44-114)||(54595145-54595215)
chr4 (173-230)||(24001541-24001598)
chr4 (50-103)||(45427031-45427084)
chr4 (53-105)||(990997-991049)
chr4 (53-105)||(991163-991215)
chr4 (43-151)||(3136992-3137099)
chr4 (49-105)||(22867039-22867095)
chr4 (49-105)||(29669456-29669511)
chr4 (49-105)||(29669771-29669826)
chr4 (49-105)||(43971994-43972050)
chr4 (49-105)||(43972310-43972366)
chr4 (53-105)||(50857971-50858023)
chr4 (53-105)||(50858287-50858339)
chr4 (53-105)||(53740141-53740193)
chr4 (49-105)||(56509564-56509620)
chr4 (162-230)||(39778352-39778422)
chr4 (49-86)||(44898834-44898871)
chr4 (53-105)||(990506-990558)
chr4 (49-105)||(29734516-29734572)
chr4 (49-105)||(32988363-32988419)
chr4 (161-221)||(46676685-46676745)
chr4 (49-105)||(48843110-48843166)
chr4 (53-105)||(52214574-52214626)
chr4 (184-231)||(22572446-22572493)
chr4 (54-104)||(42788090-42788140)
chr4 (176-230)||(49190161-49190215)
chr4 (182-243)||(3137435-3137496)
chr4 (49-109)||(23018425-23018485)
chr4 (49-105)||(36558559-36558615)
chr4 (183-219)||(50816705-50816741)
[»] chr2 (36 HSPs)
chr2 (44-189)||(18183416-18183561)
chr2 (59-197)||(14407953-14408092)
chr2 (49-105)||(18901957-18902013)
chr2 (49-103)||(17509064-17509118)
chr2 (42-230)||(37253243-37253429)
chr2 (49-105)||(3004000-3004056)
chr2 (53-105)||(3976564-3976616)
chr2 (29-105)||(5511894-5511970)
chr2 (53-105)||(11339789-11339841)
chr2 (44-132)||(14522450-14522538)
chr2 (53-105)||(15820194-15820246)
chr2 (29-105)||(39583435-39583511)
chr2 (53-105)||(43169201-43169253)
chr2 (161-207)||(3008426-3008472)
chr2 (45-109)||(43688510-43688575)
chr2 (53-105)||(3976248-3976300)
chr2 (53-105)||(3977096-3977148)
chr2 (163-223)||(7252240-7252300)
chr2 (49-105)||(7877799-7877855)
chr2 (29-101)||(9889423-9889495)
chr2 (49-109)||(18959516-18959576)
chr2 (53-105)||(21213978-21214030)
chr2 (53-105)||(23054285-23054337)
chr2 (53-105)||(43195743-43195795)
chr2 (174-230)||(43275510-43275566)
chr2 (46-93)||(1544105-1544152)
chr2 (199-230)||(3185961-3185992)
chr2 (322-369)||(9889466-9889513)
chr2 (327-370)||(20135120-20135163)
chr2 (31-90)||(21373920-21373979)
chr2 (329-371)||(21373907-21373949)
chr2 (29-103)||(33070357-33070431)
chr2 (49-82)||(5424872-5424905)
chr2 (173-230)||(21216459-21216516)
chr2 (69-102)||(35872850-35872883)
chr2 (53-105)||(21214294-21214346)
[»] scaffold0103 (1 HSPs)
scaffold0103 (75-127)||(47438-47490)


Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 32 - 440
Target Start/End: Original strand, 54861463 - 54861871
Alignment:
Q  32 tgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatat 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54861463 tgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatat 54861562  T
Q  132 gcagtatttataaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatct 231  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  54861563 gcagtgtttataaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatgagagcctatct 54861662  T
Q  232 tatatctgttgtggctttccgtatcgtctacacttcaggcttattgggaccgagtgtgaggggttgtggtggaaattctgccaccattgtgaccacccct 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  54861663 tatatctgttgtggctttccgtatcgtctacacttcaggcttattgggaccgagtgtgaggggttgtggtggaaattctgccatcattgtgaccacccct 54861762  T
Q  332 agctgcctaattaaggcatttgtgttgccttcattgcagctccgcatccctcaagccgattttgtatgatggagttaatctaccctttgtattttgaata 431  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54861763 agctgcctaattaaggcatttgtgttgccttcattgcagctccggatccctcaagccgattttgtatgatggagttaatctaccctttgtattttgaata 54861862  T
Q  432 agaataatc 440  Q
    |||||||||    
T  54861863 agaataatc 54861871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 42 - 277
Target Start/End: Original strand, 25568445 - 25568682
Alignment:
Q  42 gggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatatgcagtattta 141  Q
    |||||| || ||||||||||||||||||||||  |||||||||||||||||||||| |||||   ||| |||||| || | ||| | | || ||| ||||    
T  25568445 gggttgcctacattgcagcctccaacaccttctctgtgttgggtgtgaaggggtgggtttagcaccacattgcctagagacatgacctttgtagtgttta 25568544  T
Q  142 taaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatcttatatctgtt 241  Q
    |||| |||||| |||  | ||||||| |||  |||| |||||||||||||| |||||| ||||||| |  |||||||| ||||||||||||| || ||||    
T  25568545 taaaccttgggcagctttcaccttactagccggtttcgttaggttgagttaggcccaaaccaaattctgtgatggtattagagcctatcttagatttgtt 25568644  T
Q  242 gt--ggctttccgtatcgtctacacttcaggcttattg 277  Q
    ||  ||||| |||  ||||||||  |||||||| ||||    
T  25568645 gttgggcttcccgcgtcgtctacggttcaggctaattg 25568682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 42 - 191
Target Start/End: Original strand, 51917828 - 51917977
Alignment:
Q  42 gggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatatgcagtattta 141  Q
    |||||| |||||||||| ||| |||| ||||| || ||||| ||||||| ||||||||||||||  || |||||| || |||||||||||| ||| ||||    
T  51917828 gggttgccttcattgcaaccttcaacgccttcattatgttgagtgtgaaagggtggatttagtcctacattgcctagagatatggcatatgtagtgttta 51917927  T
Q  142 taaagcttgggtagcagttaccttacaagctagttttgttaggttgagtt 191  Q
    |||||||||||  ||  | | ||||||||| |||||||| ||| ||||||    
T  51917928 taaagcttgggccgccctcagcttacaagccagttttgtaaggatgagtt 51917977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 662661 - 662744
Alignment:
Q  29 aattgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcacttt 112  Q
    ||||||| |||  |||||| ||||||||||||||||||||||||  ||||||||||| ||||||||| ||||||||| ||||||    
T  662661 aattgcgccatttgggttgccttcattgcagcctccaacacctttattgtgttgggtttgaaggggtcgatttagtcccacttt 662744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 29 - 213
Target Start/End: Complemental strand, 39225198 - 39225010
Alignment:
Q  29 aattgcggcatacgggttgtcttcattgcagcctccaaca----ccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatat 124  Q
    |||||||||||  |||||| ||||| ||||||||||||||    ||||| |||||||||||||||||| |||| ||||||| | | |||||| || ||||    
T  39225198 aattgcggcatttgggttgccttcactgcagcctccaacatacaccttcattgtgttgggtgtgaaggcgtgggtttagtcccgcattgcctagagatat 39225099  T
Q  125 ggcatatgcagtatttataaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaaga 213  Q
    ||| | || |||   ||||||| ||||| |||  |  |||||||| |  || |||| ||||||||||| |||||||||||||| |||||    
T  39225098 ggcctttgtagtgcatataaagattgggaagctctcgccttacaaaccggtcttgtaaggttgagttaggcccaacccaaattctaaga 39225010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 13769440 - 13769384
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  13769440 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtc 13769384  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 24860209 - 24860153
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  24860209 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtc 24860153  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 41380679 - 41380735
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  41380679 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtc 41380735  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 43101520 - 43101464
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  43101520 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtc 43101464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 45443235 - 45443291
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  45443235 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtc 45443291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 50204006 - 50203946
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcac 109  Q
    ||||||||||||||||||||||||| ||||||||| | ||| ||||||| |||||||||||    
T  50204006 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtgggtttagtctcac 50203946  T

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Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 54368994 - 54369050
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  54368994 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtc 54369050  T

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Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 199
Target Start/End: Original strand, 35035050 - 35035205
Alignment:
Q  44 gttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatatgcagtatttata 143  Q
    |||| |||| ||||| ||| |||||||||| ||||||| ||| |||||||||||| |||||||||| || | | || ||||||| | ||   ||||||||    
T  35035050 gttgccttcgttgcaaccttcaacaccttcattgtgttaggtttgaaggggtggacttagtctcacatttcttagagatatggcttgtgttctatttata 35035149  T
Q  144 aagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaa 199  Q
    ||||||||| |||  |  | |||||||   ||||||||||| ||||||| ||||||    
T  35035150 aagcttgggcagccctctctttacaagtcggttttgttaggatgagttaggcccaa 35035205  T

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Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 34250521 - 34250436
Alignment:
Q  29 aattgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgc 114  Q
    ||||||| |||  |||||| ||||||||||||||||||||||||  ||||||| ||| |||||||||| |||| ||| ||| ||||    
T  34250521 aattgcgacatttgggttgccttcattgcagcctccaacaccttaattgtgttaggtttgaaggggtgaatttcgtcccacattgc 34250436  T

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Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 4255465 - 4255521
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||||| |||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  4255465 cttcattgtagcctccaacaccttcattgtgttggctttgagggggtggatttagtc 4255521  T

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Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 4256189 - 4256245
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||||||  ||||||||| | ||| |||||||||||||||    
T  4256189 cttcattgcagcctccaacacctttattgtgttggctttgagggggtggatttagtc 4256245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 14170168 - 14170092
Alignment:
Q  29 aattgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||||||||  || ||| ||||||||||||||||| ||||||| ||||||||| | ||| ||| |||||||||||    
T  14170168 aattgcggcatttggtttgccttcattgcagcctccatcaccttcattgtgttggctttgaggggctggatttagtc 14170092  T

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Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 44573285 - 44573337
Alignment:
Q  53 attgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  44573285 attgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtc 44573337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 44573914 - 44573965
Alignment:
Q  53 attgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagt 104  Q
    ||||||||||||||||||||| ||||||||| | ||| ||||||||||||||    
T  44573914 attgcagcctccaacaccttcattgtgttggctttgagggggtggatttagt 44573965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 35018507 - 35018577
Alignment:
Q  161 accttacaagctagttttgttaggttgagttacgcccaacc-caaattttaagatggtatcagagcctatc 230  Q
    |||||||||||| | ||||| |||| |||||| |||||||| |||||| ||||||| ||||||||||||||    
T  35018507 accttacaagctgggtttgtaaggtcgagttaggcccaaccacaaattctaagatgatatcagagcctatc 35018577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 3985728 - 3985784
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||| ||||||||||||||||||  |||||||| | ||| |||||||||||||||    
T  3985728 cttcatagcagcctccaacaccttcactgtgttggctttgagggggtggatttagtc 3985784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 27219288 - 27219340
Alignment:
Q  53 attgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||| | ||||||| | ||| |||||||||||||||    
T  27219288 attgcagcctccaacaccttcatcgtgttggctttgagggggtggatttagtc 27219340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 34715604 - 34715548
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||| ||||||||||||||||||  |||||||| | ||| |||||||||||||||    
T  34715604 cttcatcgcagcctccaacaccttcactgtgttggctttgagggggtggatttagtc 34715548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 48685466 - 48685410
Alignment:
Q  50 ttcattgcagcctccaacaccttcgttgtgttgggtgtga-aggggtggatttagtc 105  Q
    |||||||||||||||||||||||| ||||||||| | |||  |||||||||||||||    
T  48685466 ttcattgcagcctccaacaccttcattgtgttggctttgaggggggtggatttagtc 48685410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 369
Target Start/End: Original strand, 51917802 - 51917844
Alignment:
Q  327 cccctagctgcctaattaaggcatttgtgttgccttcattgca 369  Q
    ||||||||||||||||| | ||||||| |||||||||||||||    
T  51917802 cccctagctgcctaattgaagcatttgggttgccttcattgca 51917844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 30326938 - 30327003
Alignment:
Q  161 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcc 226  Q
    |||||||||||  ||||||| || || ||||| |||||||||| ||| ||||||||||| ||||||    
T  30326938 accttacaagccggttttgtgagtttaagttaggcccaacccagattctaagatggtattagagcc 30327003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 46139185 - 46139242
Alignment:
Q  47 gtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagt 104  Q
    |||||||||||| ||||||||| |||| ||||||||| | ||| |||||| |||||||    
T  46139185 gtcttcattgcaacctccaacatcttcattgtgttggctttgagggggtgaatttagt 46139242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 47833806 - 47833755
Alignment:
Q  53 attgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||| ||||||||||| ||||||||| | || ||||||||||||||||    
T  47833806 attgcagccaccaacaccttccttgtgttggctttg-aggggtggatttagtc 47833755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 47)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 29 - 369
Target Start/End: Complemental strand, 19811180 - 19810837
Alignment:
Q  29 aattgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggca 128  Q
    ||||| |||||  |||||| ||||||||||||||||||| |||||||||||||||||||||||  |||||||||||| ||| |||||| || |||||||     
T  19811180 aattgtggcatttgggttgccttcattgcagcctccaactccttcgttgtgttgggtgtgaagatgtggatttagtcccacgttgcctagagatatggcc 19811081  T
Q  129 tatgcagtatttataaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagccta 228  Q
    | |  ||| ||| || |||||||| | |  || ||||||||||  ||||||| ||||||| ||| ||| ||||||||||||||||||||||||||| |||    
T  19811080 tgtttagtgtttttatagcttgggcaacccttgccttacaagccggttttgtaaggttgacttaggccgaacccaaattttaagatggtatcagagacta 19810981  T
Q  229 tcttatatctgttg--tggctttccgtatcgtctacacttcaggcttattgggaccgagtgtgaggggttgtggtggaaattctgccaccattgt-gacc 325  Q
    || || ||||||||   ||||| ||| |||||| || ||||||||| |||||| | |||  ||||||| | ||||||||||||||||   ||||| | ||    
T  19810980 tcctagatctgttgcagggcttcccgcatcgtccacgcttcaggctcattgggcctgagcctgagggggtatggtggaaattctgccttaattgtggtcc 19810881  T
Q  326 acccctagctgcctaattaaggcatttgtgttgccttcattgca 369  Q
    ||||||||||||||||||  |||||||| |||| ||||||||||    
T  19810880 acccctagctgcctaattgcggcatttgggttggcttcattgca 19810837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 43 - 171
Target Start/End: Complemental strand, 34626929 - 34626801
Alignment:
Q  43 ggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatatgcagtatttat 142  Q
    ||||| ||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||| || ||  || ||||||||| || ||| |||||    
T  34626929 ggttgccttcattgcagcctccaacaccttcattctgttgggtgtgaaggagtggatttagtctcacatttcccagagatatggcatgtgtagtgtttat 34626830  T
Q  143 aaagcttgggtagcagttaccttacaagc 171  Q
    |||||||||| |||  | |||||||||||    
T  34626829 aaagcttgggcagccctcaccttacaagc 34626801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 29 - 213
Target Start/End: Complemental strand, 19810866 - 19810683
Alignment:
Q  29 aattgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggca 128  Q
    |||||||||||  |||||| |||||||||| |||| ||||||||| ||||||| |||||||||||||| |  ||||| ||| |||||| || |||||||     
T  19810866 aattgcggcatttgggttggcttcattgcaacctcgaacaccttcattgtgttaggtgtgaaggggtgca-ctagtcccacattgcctagagatatggcc 19810768  T
Q  129 tatgcagtatttataaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaaga 213  Q
    | |||| | ||||||||||||||| | |  | |||||| ||||   |||||| |||||||| || ||||||||||||||||||||    
T  19810767 tgtgcaatgtttataaagcttgggcaaccttcaccttagaagccgattttgtaaggttgagctaggcccaacccaaattttaaga 19810683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 29 - 150
Target Start/End: Original strand, 18998646 - 18998767
Alignment:
Q  29 aattgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggca 128  Q
    |||||||| ||  ||||| |||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||| ||| |||||| || ||||| |     
T  18998646 aattgcggaatttgggttttcttcattgcagccaccaacaccttcgatgtgttgggtgtgaaagggtggatttagtcccacattgcctagagatatgacc 18998745  T
Q  129 tatgcagtatttataaagcttg 150  Q
    |||| ||| | |||||||||||    
T  18998746 tatgtagtgtatataaagcttg 18998767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 42 - 213
Target Start/End: Complemental strand, 41590384 - 41590214
Alignment:
Q  42 gggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatatgcagtattta 141  Q
    |||||| ||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||  ||| || ||| || ||||||  | || |||  |||    
T  41590384 gggttgccttcattgcagcctccaacaccttcattgtgtcgggtgtgaaggggtgggtttagttccacatttcctagaaatatggtctgtgtagt-gtta 41590286  T
Q  142 taaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaaga 213  Q
    ||||||||||  | |  | | |||||||||| ||||||| ||||||||||  |||||||| ||||| |||||    
T  41590285 taaagcttggtcaaccctcatcttacaagctggttttgtaaggttgagtttggcccaacctaaattctaaga 41590214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 33248499 - 33248406
Alignment:
Q  29 aattgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacat 122  Q
    ||||||||||| |||||||  || ||||||  ||||||||||||| ||||||||||||| || |||||||||||||||||| |||||| |||||    
T  33248499 aattgcggcattcgggttgcattaattgcaatctccaacaccttcattgtgttgggtgttaacgggtggatttagtctcacattgcctagacat 33248406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 33268671 - 33268578
Alignment:
Q  29 aattgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacat 122  Q
    ||||||||||| |||||||  || ||||||  ||||||||||||| ||||||||||||| || |||||||||||||||||| |||||| |||||    
T  33268671 aattgcggcattcgggttgcattaattgcaatctccaacaccttcattgtgttgggtgttaacgggtggatttagtctcacattgcctagacat 33268578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 67 - 285
Target Start/End: Complemental strand, 41590663 - 41590452
Alignment:
Q  67 caccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatatgcagtatttataaagcttgggtagcagttacctta 166  Q
    ||||||| ||||||||||||||| |||||| |||||||| ||| |||||| || ||||| | | |       |||||||||||||| | |  | | ||||    
T  41590663 caccttcattgtgttgggtgtgagggggtgaatttagtcccacattgcctagagatatgacctgt-------ttataaagcttgggcaaccctcatctta 41590571  T
Q  167 caagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatcttatatctgttgt-ggctttccgtatcgtctacact 265  Q
    |||||  |||| || ||||||||||| ||| |||||||||| |||||||||||||||||||||| || || |||| | ||||| | |||||||| | |||    
T  41590570 caagccggtttcgtaaggttgagttaggcc-aacccaaattctaagatggtatcagagcctatcctagatatgttatgggcttactgtatcgtccatact 41590472  T
Q  266 tcaggcttattgggaccgag 285  Q
    ||||||| |||||| |||||    
T  41590471 tcaggctaattgggcccgag 41590452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 54 - 200
Target Start/End: Original strand, 12410365 - 12410512
Alignment:
Q  54 ttgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcac-tttgcctggacatatggcatatgcagtatttataaagcttggg 152  Q
    |||||||||||||||||||| | |||||||||||||||| || ||||||||| ||| ||| | | || ||||||| |||| |||  |||||||| |||||    
T  12410365 ttgcagcctccaacaccttcatcgtgttgggtgtgaaggagttgatttagtcccacattttcatagagatatggcctatgtagtgcttataaagtttggg 12410464  T
Q  153 tagcagttaccttacaagctagttttgttaggttgagttacgcccaac 200  Q
     |||  | |||||||||  | ||||||| |||||| |||| |||||||    
T  12410465 cagccttcaccttacaaagtggttttgtaaggttgggttaggcccaac 12410512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 29 - 143
Target Start/End: Original strand, 6868068 - 6868182
Alignment:
Q  29 aattgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggca 128  Q
    |||||| ||||  |||||| | ||| ||||||||||||||||||| || |||||||| ||||||||||||||||||| ||| || | | || |||||||     
T  6868068 aattgcagcatttgggttgccctcactgcagcctccaacaccttcattttgttgggtttgaaggggtggatttagtcccacattacttagagatatggcc 6868167  T
Q  129 tatgcagtatttata 143  Q
    | |||||| ||||||    
T  6868168 tgtgcagtgtttata 6868182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 51515669 - 51515726
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtg-aaggggtggatttagtc 105  Q
    ||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||    
T  51515669 cttcattgctgcctccaacaccttcattgtgttgggtgtgaaaggggtggatttagtc 51515726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 85 - 213
Target Start/End: Complemental strand, 19810070 - 19809943
Alignment:
Q  85 tgtgaaggggtggatttagtctcactttgcctggacatatggcatatgcagtatttataaagcttgggtagcagttaccttacaagctagttttgttagg 184  Q
    |||||||||||||||| |||| ||| |||||| || ||||||  | || | | ||||||||||||||| |||  | |||||||||||   |||||| |||    
T  19810070 tgtgaaggggtggatt-agtcccacattgcctagatatatggtctgtgtaatgtttataaagcttgggcagccttcaccttacaagccgattttgtaagg 19809972  T
Q  185 ttgagttacgcccaacccaaattttaaga 213  Q
    |||||||| |||||||||||| |||||||    
T  19809971 ttgagttaggcccaacccaaaatttaaga 19809943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 31305666 - 31305722
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  31305666 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtc 31305722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 40566422 - 40566359
Alignment:
Q  42 gggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||| ||||||| |||| |||||||||||| ||||||||||||||||||| |||||| ||||    
T  40566422 gggttgccttcattacagcttccaacaccttcattgtgttgggtgtgaagggatggattcagtc 40566359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 58 - 243
Target Start/End: Original strand, 18998357 - 18998543
Alignment:
Q  58 agcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatatgcagtatttataaagcttgggtagca 157  Q
    ||||||||  || ||| ||||||||||||||||||||  || |||||||||| |||||| || |||| || | || ||| ||||||||||||| | |||     
T  18998357 agcctccatgacattcattgtgttgggtgtgaaggggcagacttagtctcacattgcctagagatattgcttttgtagtgtttataaagcttgagcagcc 18998456  T
Q  158 gttaccttacaagctag-ttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatcttatatctgttgt 243  Q
     | |||||||||||  | |||||| |||||||| || | ||  ||| ||||  ||||| ||||||||||||||| ||  ||||||||    
T  18998457 ctcaccttacaagccggtttttgtaaggttgaggtaggtcctgccccaattccaagatagtatcagagcctatcctaggtctgttgt 18998543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 19459660 - 19459734
Alignment:
Q  31 ttgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||||||  |||||| ||  ||||||||||||||| ||||| ||||||||||||||| ||||||| |||||||    
T  19459660 ttgcggcatttgggttgcctaaattgcagcctccaactccttcattgtgttgggtgtgagggggtgggtttagtc 19459734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 14623155 - 14623200
Alignment:
Q  42 gggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgt 87  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||    
T  14623155 gggttgccttcattgcagcctccaacaccttcattgtgttgggtgt 14623200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 213
Target Start/End: Complemental strand, 17557874 - 17557708
Alignment:
Q  45 ttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatatgcagtatttataa 144  Q
    |||||||||||  |||||||||||  ||| ||||||  |||||  ||||||| ||||| || ||| |||||| || ||||| | | |  ||| |||||||    
T  17557874 ttgtcttcattcaagcctccaacagattcattgtgtctggtgtacaggggtgaatttaatcccacattgcctagagatatgacgtgt--agtgtttataa 17557777  T
Q  145 agcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaaga 213  Q
    ||||| || | |  | ||||||||||||  |||||| ||||||||||| |||||||||||||| |||||    
T  17557776 agcttaggcaaccctcaccttacaagctgattttgtaaggttgagttaggcccaacccaaattctaaga 17557708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 20735477 - 20735530
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggattta 102  Q
    ||||||||||||||||||||||||| ||||||||| | ||| ||||||||||||    
T  20735477 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggattta 20735530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 2697484 - 2697424
Alignment:
Q  45 ttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||||||||||| |||||  || | ||| |||||||||||||||    
T  2697484 ttgtcttcattgcagcctccaacaccttcattgtgacggctttgagggggtggatttagtc 2697424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 8520242 - 8520186
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||| ||||| ||||||||| | ||| |||||||||||||||    
T  8520242 cttcattgcagcctccaaccccttcattgtgttggctttgagggggtggatttagtc 8520186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 33879927 - 33879871
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||||||| ||||||||| | |||  ||||||||||||||    
T  33879927 cttcattgcagcctccaacaccttcattgtgttggctttgagagggtggatttagtc 33879871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 33964328 - 33964384
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||||||| ||||||||| | |||  ||||||||||||||    
T  33964328 cttcattgcagcctccaacaccttcattgtgttggctttgagagggtggatttagtc 33964384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 45264618 - 45264674
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||| |||||||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  45264618 cttctttgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtc 45264674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 15013480 - 15013539
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctca 108  Q
    |||||||||| |||||||||||||| ||||||||| | ||| |||||| |||||||||||    
T  15013480 cttcattgcaacctccaacaccttcattgtgttggctttgagggggtgaatttagtctca 15013539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 127
Target Start/End: Complemental strand, 51188948 - 51188885
Alignment:
Q  64 caacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggc 127  Q
    |||||||||| ||||||||||| ||||||||||||||||||| ||| |||| | || |||||||    
T  51188948 caacaccttcattgtgttgggtttgaaggggtggatttagtcccacattgcttagagatatggc 51188885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 40571594 - 40571675
Alignment:
Q  161 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatcttatatctgttgt 243  Q
    |||||||||| | ||||||| ||||||||||| |||||| ||||| ||||||||||||||| || ||||| |  |||||||||    
T  40571594 accttacaagttggttttgtaaggttgagttaggcccaatccaaa-tttaagatggtatcaaagtctatccttgatctgttgt 40571675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 10239500 - 10239549
Alignment:
Q  163 cttacaagctagttttgttaggttgagttacgcccaacccaaattttaag 212  Q
    ||||||||| |||||||| ||||||||||| ||||||||||| |||||||    
T  10239500 cttacaagccagttttgtaaggttgagttaggcccaacccaagttttaag 10239549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 43423238 - 43423287
Alignment:
Q  53 attgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggattta 102  Q
    ||||||||||||||||||||| ||||||||| | ||| ||||||||||||    
T  43423238 attgcagcctccaacaccttcattgtgttggctttgagggggtggattta 43423287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 347110 - 347170
Alignment:
Q  161 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatca 221  Q
    |||||||||||| ||||||| ||||||||||| | |||||||||||| ||| ||| |||||    
T  347110 accttacaagctggttttgtaaggttgagttagggccaacccaaattctaatatgttatca 347170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 152
Target Start/End: Complemental strand, 12581485 - 12581389
Alignment:
Q  57 cagcctccaacaccttcgttgtgttgggtgtg-aaggggtggatttagtctcactttgcctggacatatggcatatgcagtatttataaagcttggg 152  Q
    |||| |||||||||||| |||||||||||||| || |||||||||||||| ||| |||||   | ||||||||| |  ||| |||||||||| ||||    
T  12581485 cagcttccaacaccttcattgtgttgggtgtgaaatgggtggatttagtcccacgttgcccaaagatatggcatgtttagtgtttataaagcatggg 12581389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 17419746 - 17419798
Alignment:
Q  53 attgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||| ||||||||| ||||||||| | ||| |||||||||||||||    
T  17419746 attgcagcctcaaacaccttcattgtgttggctttgagggggtggatttagtc 17419798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 19937188 - 19937136
Alignment:
Q  53 attgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||| |||||||||||||| ||||||||| | ||| |||||||||||||||    
T  19937188 attgcatcctccaacaccttcattgtgttggctttgatggggtggatttagtc 19937136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 40566102 - 40566046
Alignment:
Q  174 gttttgttaggttgagttacgcccaacccaaattt-taagatggtatcagagcctat 229  Q
    ||||||| |||||| |||| |||||||||||| || |||||||||||||||||||||    
T  40566102 gttttgtaaggttgggttatgcccaacccaaaattctaagatggtatcagagcctat 40566046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 147
Target Start/End: Complemental strand, 7908014 - 7907895
Alignment:
Q  29 aattgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtg-aaggggtggatttagtctcactttgcctggacatatggc 127  Q
    ||||| |||||  |||||| |||||||||| |||||  ||  ||| |||||||||||||| ||||||||||||||||| ||| || |   || |||||||    
T  7908014 aattgtggcatttgggttgccttcattgcatcctccggcagtttcattgtgttgggtgtgaaaggggtggatttagtcccacatttctcagagatatggc 7907915  T
Q  128 atatgcagtatttataaagc 147  Q
    || || ||| ||||||||||    
T  7907914 atgtgtagtgtttataaagc 7907895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 213
Target Start/End: Complemental strand, 21641444 - 21641405
Alignment:
Q  174 gttttgttaggttgagttacgcccaacccaaattttaaga 213  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  21641444 gttttgtaaggttgagttaggcccaacccaaattttaaga 21641405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 8520384 - 8520350
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgg 83  Q
    ||||||||||||||||||||||||| |||||||||    
T  8520384 cttcattgcagcctccaacaccttcattgtgttgg 8520350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 230
Target Start/End: Complemental strand, 40188709 - 40188675
Alignment:
Q  196 ccaacccaaattttaagatggtatcagagcctatc 230  Q
    |||||||||||||||||||||| ||||||||||||    
T  40188709 ccaacccaaattttaagatggtgtcagagcctatc 40188675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 1306057 - 1306098
Alignment:
Q  183 ggttgagttacgcccaacccaaattttaagatggtatcagag 224  Q
    |||||||||  |||||||| ||||||||||||||||||||||    
T  1306057 ggttgagtttggcccaaccaaaattttaagatggtatcagag 1306098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 4022263 - 4022218
Alignment:
Q  60 cctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||||||||||| ||||||||| | ||| |||||||||||||||    
T  4022263 cctccaacaccttcattgtgttggctttgagggggtggatttagtc 4022218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 7525054 - 7525107
Alignment:
Q  161 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaagat 214  Q
    |||||||||||| ||||||| ||||||||||| || ||| ||||||| ||||||    
T  7525054 accttacaagctggttttgtaaggttgagttaggctcaatccaaattctaagat 7525107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 230
Target Start/End: Original strand, 9632291 - 9632320
Alignment:
Q  201 ccaaattttaagatggtatcagagcctatc 230  Q
    ||||||||||||||||||||||||||||||    
T  9632291 ccaaattttaagatggtatcagagcctatc 9632320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 11584349 - 11584398
Alignment:
Q  175 ttttgttaggttgagttacgcccaacccaaattttaagatggtatcagag 224  Q
    |||||||||| ||||||| | |||||||||||| ||| ||||||||||||    
T  11584349 ttttgttaggctgagttaggtccaacccaaattctaatatggtatcagag 11584398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 13978535 - 13978584
Alignment:
Q  44 gttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggg 93  Q
    |||| |||||||||| ||||||| || ||| |||||||||||||||||||    
T  13978535 gttgccttcattgcatcctccaatacgttcattgtgttgggtgtgaaggg 13978584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 11636239 - 11636199
Alignment:
Q  29 aattgcggcatacgggttgtcttcattgcagcctccaacac 69  Q
    |||||| ||||  ||||||||||||||||||||||||||||    
T  11636239 aattgcagcatttgggttgtcttcattgcagcctccaacac 11636199  T

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Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 19811193 - 19811149
Alignment:
Q  327 cccctagctgcctaattaaggcatttgtgttgccttcattgcagc 371  Q
    |||||||| ||||||||  |||||||| |||||||||||||||||    
T  19811193 cccctagccgcctaattgtggcatttgggttgccttcattgcagc 19811149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 230
Target Start/End: Original strand, 27829719 - 27829747
Alignment:
Q  202 caaattttaagatggtatcagagcctatc 230  Q
    |||||||||||||||||||||||||||||    
T  27829719 caaattttaagatggtatcagagcctatc 27829747  T

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Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 42 - 230
Target Start/End: Original strand, 30590396 - 30590584
Alignment:
Q  42 gggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatatgcagtattta 141  Q
    |||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||| |||| | || ||||||||| || ||| ||||    
T  30590396 gggttgccttcattgcagcctccaacaccttcattgtgtttggtgtgaaggggtggatttagtcccacattgcatagatatatggcatgtgtagtgttta 30590495  T
Q  142 taaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatc 230  Q
    ||||||||||| |||  | |||||||||||  ||||||| ||||||| ||| ||| | |||||||| ||| ||||||||| ||||||||    
T  30590496 taaagcttgggcagccctcaccttacaagccggttttgtaaggttgacttaggcctagcccaaattctaatatggtatcaaagcctatc 30590584  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 29 - 151
Target Start/End: Original strand, 38887036 - 38887158
Alignment:
Q  29 aattgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggca 128  Q
    |||||||||||  |||||| |||| |||||||||||||||||||| ||||||||||||||||||||| |||||| || ||| |||||| || ||||| |     
T  38887036 aattgcggcatttgggttgccttcgttgcagcctccaacaccttcattgtgttgggtgtgaaggggttgatttaatcccacattgcctagagatatgacc 38887135  T
Q  129 tatgcagtatttataaagcttgg 151  Q
    |||| |||  |||||||||||||    
T  38887136 tatgtagtgcttataaagcttgg 38887158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 44933237 - 44933170
Alignment:
Q  42 gggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcac 109  Q
    |||||| |||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  44933237 gggttgccttcattgcaccctccaacaccttcattgtgttgggtttgaaggggtggatttagtctcac 44933170  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 49 - 213
Target Start/End: Original strand, 26642542 - 26642706
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatatgcagtatttataaagct 148  Q
    ||||||||||| ||| ||||||||| |||||||| ||||||  |||||||||||||  ||| |||||| || ||||| ||| || ||| ||||||||  |    
T  26642542 cttcattgcagtctcaaacaccttcattgtgttgagtgtgattgggtggatttagttccacattgcctagagatatgacatgtgtagtgtttataaattt 26642641  T
Q  149 tgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaaga 213  Q
    |  | |||  | |||||||||||  |||| || ||||||| ||| |||||||||||||| |||||    
T  26642642 taagaagccttcaccttacaagccggtttggtaaggttgatttaggcccaacccaaattctaaga 26642706  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 29 - 192
Target Start/End: Original strand, 34529922 - 34530085
Alignment:
Q  29 aattgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggca 128  Q
    |||||||||||  |||||| |||||||  ||||||| | |||||| ||||||||||||| |||||| |||||||||| ||| |||  | ||  |||||      
T  34529922 aattgcggcatttgggttgccttcatttaagcctcctataccttcattgtgttgggtgtaaaggggcggatttagtcccacattgattagaggtatggtc 34530021  T
Q  129 tatgcagtatttataaagcttgggtagcagttaccttacaagctagttttgttaggttgagtta 192  Q
    | || ||| ||||||||||||||| | | || |||| ||||||| ||||||| ||| |||||||    
T  34530022 tgtgtagtgtttataaagcttgggcatccgtcacctcacaagcttgttttgtaaggatgagtta 34530085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 25971381 - 25971447
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcc 115  Q
    |||||||||||| |||||||||||| ||||| |||||||||||||||||||| |||| ||| |||||    
T  25971381 cttcattgcagcatccaacaccttcattgtgctgggtgtgaaggggtggattcagtcacacattgcc 25971447  T

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Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 28488486 - 28488425
Alignment:
Q  44 gttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||| ||||||||||||||  ||||||||| ||||||||||| |||||||||||||||||||    
T  28488486 gttgccttcattgcagccttaaacaccttcattgtgttgggtttgaaggggtggatttagtc 28488425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 20298665 - 20298609
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  20298665 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtc 20298609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 21085297 - 21085241
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  21085297 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtc 21085241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 145
Target Start/End: Original strand, 26639066 - 26639162
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatatgcagtatttataaa 145  Q
    ||||||||||| | ||||||||||| |||||||| |||||| ||||||||||||||| ||| |||||| || ||| | ||| || ||| ||||||||    
T  26639066 cttcattgcagtccccaacaccttcattgtgttgagtgtgagggggtggatttagtcccacattgccttgagatacgacatgtgtagtgtttataaa 26639162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 154
Target Start/End: Complemental strand, 16213265 - 16213180
Alignment:
Q  69 ccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatatgcagtatttataaagcttgggta 154  Q
    ||||| ||||||||| |||||||||||||||||||||||||  ||||| || ||||||| |||| |||  |||||| | |||||||    
T  16213265 ccttcattgtgttggatgtgaaggggtggatttagtctcacactgcctagagatatggcctatgtagtgattataatgtttgggta 16213180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 23027654 - 23027598
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||| ||||||||| ||||||||| | ||| |||||||||||||||    
T  23027654 cttcattgcagcctcaaacaccttcattgtgttggctttgagggggtggatttagtc 23027598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 23027977 - 23027921
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||||||||||| |||||||||| ||||||||| | ||| |||||||||||||||    
T  23027977 cttcattgcagccttcaacaccttcattgtgttggctttgagggggtggatttagtc 23027921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 31766956 - 31767012
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||| ||||| ||||||||| | ||| |||||||||||||||    
T  31766956 cttcattgcagcctccaaccccttcattgtgttggctttgagggggtggatttagtc 31767012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 39590653 - 39590708
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||| ||||||||||||| ||||||| ||||||||||||||||| |||||    
T  39590653 cttcattgcagtctccaacaccttcattgtgtt-ggtgtgaaggggtggatatagtc 39590708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 3184052 - 3184002
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggat 99  Q
    ||||||||||||||||||||||||| ||||||||| | ||| |||||||||    
T  3184052 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggat 3184002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 15157041 - 15157093
Alignment:
Q  53 attgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||||||||||   | |||||||||||||||||||| ||||||||||||||    
T  15157041 attgcagcctccattgcgttcgttgtgttgggtgtgaaagggtggatttagtc 15157093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 18905815 - 18905867
Alignment:
Q  53 attgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||  ||||||||| | ||| |||||||||||||||    
T  18905815 attgcagcctccaacacctttattgtgttggctttgagggggtggatttagtc 18905867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 36997125 - 36997177
Alignment:
Q  53 attgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||| ||||||||| | ||| |||||||| ||||||    
T  36997125 attgcagcctccaacaccttcattgtgttggctttgagggggtggaattagtc 36997177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 371
Target Start/End: Original strand, 30590343 - 30590414
Alignment:
Q  301 tggaaattctgccaccattgtgac-cacccctagctgcctaattaaggcatttgtgttgccttcattgcagc 371  Q
    ||||||||||||| ||||||||   ||||||||||||||||| |   ||||||| |||||||||||||||||    
T  30590343 tggaaattctgcctccattgtggttcacccctagctgcctaactgtagcatttgggttgccttcattgcagc 30590414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 18900881 - 18900827
Alignment:
Q  51 tcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||||||||||| | ||||||  | ||||| ||||||||||||||||||||||    
T  18900881 tcattgcagcctccgataccttcactatgttgagtgtgaaggggtggatttagtc 18900827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 239
Target Start/End: Complemental strand, 29053781 - 29053703
Alignment:
Q  161 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatcttatatctg 239  Q
    |||||||||| ||||||||| |||||||||||    ||||| ||||| ||||||||||| ||||| |||| || |||||    
T  29053781 accttacaagttagttttgtaaggttgagttaaattcaaccgaaattctaagatggtattagagcttatcctagatctg 29053703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 40754399 - 40754433
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgg 83  Q
    ||||||||||||||||||||||||| |||||||||    
T  40754399 cttcattgcagcctccaacaccttcattgtgttgg 40754433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 21653285 - 21653338
Alignment:
Q  53 attgcagcctccaacaccttcgttgtgttgggtgtga-aggggtggatttagtc 105  Q
    ||||||||||||||||||||| ||||||||| | |||  |||||||||||||||    
T  21653285 attgcagcctccaacaccttcattgtgttggctttgaggggggtggatttagtc 21653338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 21653762 - 21653815
Alignment:
Q  53 attgcagcctccaacaccttcgttgtgttgggtgtga-aggggtggatttagtc 105  Q
    ||||||||||||||||||||| ||||||||| | |||  |||||||||||||||    
T  21653762 attgcagcctccaacaccttcattgtgttggctttgaggggggtggatttagtc 21653815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 281
Target Start/End: Original strand, 25971171 - 25971247
Alignment:
Q  207 tttaagatggtatcagagcctatcttatatctgttgt--ggctttccgtatcgtctacacttcaggcttattgggac 281  Q
    |||||||||| ||||||||||||| || |||||||||  | ||| ||| |||||| |||||||||||| | ||||||    
T  25971171 tttaagatggaatcagagcctatcctagatctgttgttggacttcccgcatcgtccacacttcaggctcactgggac 25971247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 30014376 - 30014320
Alignment:
Q  161 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggta 218  Q
    ||||||||| || |||| || ||||||||||| || ||||||||||||||||||||||    
T  30014376 accttacaacctggtttcgtaaggttgagtta-gctcaacccaaattttaagatggta 30014320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 5692953 - 5692901
Alignment:
Q  161 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaaga 213  Q
    |||||||||| |||||||||  |||||||||| ||  ||||||||||||||||    
T  5692953 accttacaagttagttttgtagggttgagttaagcttaacccaaattttaaga 5692901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 22277479 - 22277535
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||| ||| || |||||| | ||| |||||| ||||||||    
T  22277479 cttcattgcagcctccaacactttcattttgttggctttgagggggtgaatttagtc 22277535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 30005618 - 30005574
Alignment:
Q  43 ggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgt 87  Q
    ||||| ||||||||||||||||||||| | | |||||||||||||    
T  30005618 ggttgccttcattgcagcctccaacacttccattgtgttgggtgt 30005574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 6e-38; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 44 - 367
Target Start/End: Complemental strand, 31973588 - 31973267
Alignment:
Q  44 gttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatatgcagtatttata 143  Q
    |||| ||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||| ||| || || ||||||| |||| ||| ||||||    
T  31973588 gttgcctttattgcagcctccaacaccttcattgtgttgggtgtgaaagggtggatttagtcccacattgtctagagatatggcctatgtagtgtttata 31973489  T
Q  144 aagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatcttatatctgttg- 242  Q
    ||| ||||| |||  | |||| ||| ||| ||||||| ||||    ||| |||||||||||||| |||||||||||||||| ||||  || || |||||     
T  31973488 aagtttgggcagccctcacctcacacgctggttttgtaaggt----ttatgcccaacccaaattctaagatggtatcagagtctatactagatatgttgt 31973393  T
Q  243 tggctttccgtatcgtctacacttcaggcttattgggaccgagtgtgaggggttgtggtggaaattctgccaccattg-tgaccacccctagctgcctaa 341  Q
    ||  |||||| |  ||| || |||| |||| |||||| ||||| |||||||  |||| |||||||||||||  |||||  | || |||| ||| ||||||    
T  31973392 tgtgtttccgcactgtccacgcttctggctcattgggcccgagcgtgagggagtgtgttggaaattctgccttcattgcagtccgcccccagccgcctaa 31973293  T
Q  342 ttaaggcatttgtgttgccttcattg 367  Q
    ||  |||||||| ||| |||||||||    
T  31973292 ttgcggcatttgggtttccttcattg 31973267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 29 - 199
Target Start/End: Original strand, 4796293 - 4796463
Alignment:
Q  29 aattgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggca 128  Q
    |||||| ||||  |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||| | || ||||||||    
T  4796293 aattgcagcatttgggttgccttcattgcagcctccaacaccttcattgtgttgggtgtgaaggggtggatttagtcacacattgcttagagatatggca 4796392  T
Q  129 tatgcagtatttataaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaa 199  Q
    | || ||| |||||||||| |||| |||  | |||||||||||  ||||||| ||| ||||||| ||||||    
T  4796393 tgtgtagtgtttataaagcatgggcagccctcaccttacaagcgggttttgtaaggatgagttaggcccaa 4796463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 30 - 212
Target Start/End: Original strand, 16275178 - 16275359
Alignment:
Q  30 attgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcat 129  Q
    ||||||||||  |||||| ||||||||||||||||   |||||| ||||||||| ||| ||||||||||||||||| ||| |||||| || ||||||| |    
T  16275178 attgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacattgcctagagatatggcct 16275276  T
Q  130 atgcagtatttataaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaag 212  Q
     || ||| | | ||||| ||||| |||  | |||||||||| | ||||||| |||||||||||  |||| |||||||| ||||    
T  16275277 gtgtagtgtgtgtaaagtttgggcagccctcaccttacaaggtggttttgtaaggttgagttagacccagcccaaattctaag 16275359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 15844562 - 15844493
Alignment:
Q  161 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatc 230  Q
    ||||||| ||| |||||||| || |||||||| |||||||||||||||||||||||| ||||||||||||    
T  15844562 accttactagccagttttgtaagattgagttaggcccaacccaaattttaagatggtgtcagagcctatc 15844493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 31973294 - 31973218
Alignment:
Q  29 aattgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||||||||  |||||  |||||||| |  ||||||||||||||||||||||||| |||||||||||||||||||    
T  31973294 aattgcggcatttgggtttccttcattgaaatctccaacaccttcgttgtgttgggtttgaaggggtggatttagtc 31973218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 15844393 - 15844317
Alignment:
Q  29 aattgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||||||||  |||||  |||| ||||| ||| |||||||||| |||||||| ||||||||||||||||||||||    
T  15844393 aattgcggcatttgggttaccttcgttgcaacctacaacaccttcattgtgttgagtgtgaaggggtggatttagtc 15844317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 27760346 - 27760402
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  27760346 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtc 27760402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 53 - 111
Target Start/End: Original strand, 20811413 - 20811471
Alignment:
Q  53 attgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactt 111  Q
    ||||||||||||||||||||| ||||||||| | ||| ||||||||||||||| |||||    
T  20811413 attgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccactt 20811471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 1028239 - 1028186
Alignment:
Q  52 cattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||||||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  1028239 cattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtc 1028186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 873845 - 873789
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||||||||| |||||||||||| ||||||||| | ||| |||||||||||||||    
T  873845 cttcattgcagcttccaacaccttcattgtgttggctttgagggggtggatttagtc 873789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 13843656 - 13843708
Alignment:
Q  53 attgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  13843656 attgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtc 13843708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 13843972 - 13844024
Alignment:
Q  53 attgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  13843972 attgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtc 13844024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 27760030 - 27760086
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||| ||| ||||||||| | ||| |||||||||||||||    
T  27760030 cttcattgcagcctccaacactttcattgtgttggctttgagggggtggatttagtc 27760086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 28010265 - 28010209
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||||||||||| |||||||||| ||||||||| | ||| |||||||||||||||    
T  28010265 cttcattgcagccttcaacaccttcattgtgttggctttgagggggtggatttagtc 28010209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 111
Target Start/End: Original strand, 20837768 - 20837826
Alignment:
Q  53 attgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactt 111  Q
    |||||||| |||||||||||| ||||||||| | ||| ||||||||||||||| |||||    
T  20837768 attgcagcatccaacaccttcattgtgttggctttgagggggtggatttagtcccactt 20837826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 40261092 - 40261034
Alignment:
Q  184 gttgagttacgcccaacccaaattttaagatggtatcagagcctatcttatatctgttg 242  Q
    ||||| ||| |||||||||||||| ||| ||||||||||| ||||||| ||||||||||    
T  40261092 gttgaattaggcccaacccaaattctaatatggtatcagaacctatctaatatctgttg 40261034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 17016242 - 17016186
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||||  |||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  17016242 cttcattatagcctccaacaccttcattgtgttggctttgagggggtggatttagtc 17016186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 24918119 - 24918175
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||||||| | |||||||||||| ||||||||| | ||| |||||||||||||||    
T  24918119 cttcattgcaacttccaacaccttcattgtgttggctttgagggggtggatttagtc 24918175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 24994027 - 24994083
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||||||| | |||||||||||| ||||||||| | ||| |||||||||||||||    
T  24994027 cttcattgcaacttccaacaccttcattgtgttggctttgagggggtggatttagtc 24994083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 28009946 - 28009890
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||| ||||||||| ||||||||| | ||| || ||||||||||||    
T  28009946 cttcattgcagcctcaaacaccttctttgtgttggctttgagggcgtggatttagtc 28009890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 37995783 - 37995727
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||| |||| |||||||||||| ||||||||| | ||| |||||||||||||||    
T  37995783 cttcattccagcttccaacaccttcattgtgttggctttgagggggtggatttagtc 37995727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 213
Target Start/End: Complemental strand, 22199025 - 22198986
Alignment:
Q  174 gttttgttaggttgagttacgcccaacccaaattttaaga 213  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  22199025 gttttgtaaggttgagttaggcccaacccaaattttaaga 22198986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 904907 - 904837
Alignment:
Q  44 gttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgc 114  Q
    |||| |||||||||||||| |||  ||||| ||||||||  | ||||||||||||||||||| ||| ||||    
T  904907 gttgccttcattgcagccttcaagcccttcattgtgttgcctttgaaggggtggatttagtcccacattgc 904837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 17435391 - 17435353
Alignment:
Q  45 ttgtcttcattgcagcctccaacaccttcgttgtgttgg 83  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  17435391 ttgtcttcattgcaacctccaacaccttcattgtgttgg 17435353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 28132137 - 28132085
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggattt 101  Q
    ||||||||||| |||||||||||||  |||||  ||||||||||| |||||||    
T  28132137 cttcattgcagtctccaacaccttcactgtgtctggtgtgaagggatggattt 28132085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 29 - 240
Target Start/End: Complemental strand, 39080110 - 39079899
Alignment:
Q  29 aattgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggca 128  Q
    |||||||||||  |||||| |||| || |||||||||||||| || |||| | ||||||| ||||||||||||| |||||| |||||| || ||||| ||    
T  39080110 aattgcggcatttgggttgccttcgttccagcctccaacaccctcattgtatcgggtgtggaggggtggatttaatctcacattgcctagagatatgaca 39080011  T
Q  129 tatgcagtatttataaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagccta 228  Q
    | || ||| |||||||| |||| | |||    || ||||||||  ||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||    
T  39080010 tgtgtagtgtttataaaacttgtgcagcccccactttacaagccggttttgtaaggtttagttaggcccaacccaaattttaagatggcatcagagccta 39079911  T
Q  229 tcttatatctgt 240  Q
    || || ||||||    
T  39079910 tcctagatctgt 39079899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 42 - 206
Target Start/End: Complemental strand, 30610962 - 30610800
Alignment:
Q  42 gggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatatgcagtattta 141  Q
    |||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||| |||||| || ||||||| |    ||| ||||    
T  30610962 gggttgccttcattgcagcctccaacaccttcattgtgttgggtgggaaggggtggatttaatctcacattgcctagagatatggcct---tagtgttta 30610866  T
Q  142 taaagcttgggtagcagttaccttac-aagctagttttgttaggttgagttacgcccaacccaaat 206  Q
    ||||||||||| |||  | ||||||| ||||| ||||||| |||||||||||  ||||||| ||||    
T  30610865 taaagcttgggcagccctcaccttacaaagctggttttgtaaggttgagttagacccaacctaaat 30610800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 60 - 213
Target Start/End: Complemental strand, 16015547 - 16015394
Alignment:
Q  60 cctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatatgcagtatttataaagcttgggtagcagt 159  Q
    ||||||| | |||| ||||||||  ||||||||||||||||||||| ||| |||||| || ||||||||| || ||| ||||||||| ||||| |||  |    
T  16015547 cctccaaaatcttcattgtgttgactgtgaaggggtggatttagtcccacgttgcctagagatatggcatgtgtagtgtttataaagtttgggcagccct 16015448  T
Q  160 taccttacaagctagttttgttaggttgagttacgcccaacccaaattttaaga 213  Q
     |||||| ||||| ||||||| ||||||||||| | |||| |||||||||||||    
T  16015447 caccttaaaagctggttttgtaaggttgagttaggtccaatccaaattttaaga 16015394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 33 - 152
Target Start/End: Complemental strand, 422826 - 422707
Alignment:
Q  33 gcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatatg 132  Q
    |||||||  |||||| || ||||||||| |||||||||||| ||||||||||||||||||||||  |||| || ||| |||||| || ||||||| ||||    
T  422826 gcggcatttgggttgcctccattgcagcttccaacaccttcattgtgttgggtgtgaaggggtgactttaatcccacattgcctagagatatggcctatg 422727  T
Q  133 cagtatttataaagcttggg 152  Q
    ||||  ||||||||||||||    
T  422726 cagtgattataaagcttggg 422707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 29 - 156
Target Start/End: Complemental strand, 12840741 - 12840614
Alignment:
Q  29 aattgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggca 128  Q
    |||||||||||  ||||||| |||||||||  ||||||||||||||||||||||||| |||| |||||| ||||||  ||| |||||| || |||||||     
T  12840741 aattgcggcatttgggttgttttcattgcattctccaacaccttcgttgtgttgggtttgaaagggtggctttagttccacattgcctagagatatggct 12840642  T
Q  129 tatgcagtatttataaagcttgggtagc 156  Q
    | || ||| |||||||||||| ||||||    
T  12840641 tgtgtagtgtttataaagctttggtagc 12840614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 29 - 239
Target Start/End: Complemental strand, 16015889 - 16015680
Alignment:
Q  29 aattgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggca 128  Q
    |||||||||||  |||||  ||||||||||||||||||||  ||| | ||||| |||||||| |||  |||||| || ||| |||||| || |||||||     
T  16015889 aattgcggcatttgggttaccttcattgcagcctccaacattttcatcgtgttcggtgtgaatgggcagatttattcccacattgcctagagatatggct 16015790  T
Q  129 tatgcagtatttataaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagccta 228  Q
    |  | ||| |||| |||||||||| |||  | |||||||||| | | ||||| ||||||||||| |||||| | ||||||||||||| ||| ||||||||    
T  16015789 ttcgtagtgtttagaaagcttgggcagccctcaccttacaag-tcggtttgtaaggttgagttaggcccaatcaaaattttaagatgatattagagccta 16015691  T
Q  229 tcttatatctg 239  Q
    || || |||||    
T  16015690 tcctagatctg 16015680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 60 - 213
Target Start/End: Complemental strand, 14596019 - 14595866
Alignment:
Q  60 cctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatatgcagtatttataaagcttgggtagcagt 159  Q
    ||||||| | |||| ||||||||  ||||||||||||||||||| | ||| |||||| || ||||||||| || ||| ||||||||| ||||| |||  |    
T  14596019 cctccaaaatcttcattgtgttgactgtgaaggggtggatttagccccacgttgcctagagatatggcatgtgtagtgtttataaagtttgggcagccct 14595920  T
Q  160 taccttacaagctagttttgttaggttgagttacgcccaacccaaattttaaga 213  Q
     |||||| ||||  ||||||| ||||||||||| | |||| |||||||||||||    
T  14595919 caccttaaaagccggttttgtaaggttgagttaggtccaatccaaattttaaga 14595866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 45 - 150
Target Start/End: Original strand, 41389257 - 41389362
Alignment:
Q  45 ttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatatgcagtatttataa 144  Q
    |||||||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||| ||| |||| | || |||| || | || |||||||||||    
T  41389257 ttgtcttcattgcagccatcaacaccttcattgtgttaggtgtgaaggggtggatttagtcccacattgcttagagatatagcctgtgtagtatttataa 41389356  T
Q  145 agcttg 150  Q
    ||||||    
T  41389357 agcttg 41389362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 42 - 214
Target Start/End: Original strand, 41387478 - 41387650
Alignment:
Q  42 gggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatatgcagtattta 141  Q
    |||||| |||||||||| |||||||||||||| ||||||| ||| ||||||||||| ||||||| ||| |||||| ||||||||   |||| |||  |||    
T  41387478 gggttgccttcattgcaacctccaacaccttcattgtgttaggtatgaaggggtgggtttagtcccacattgccttgacatatgaactatgtagtgctta 41387577  T
Q  142 taaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaagat 214  Q
    ||||  |||||||||  | |||||||||||  ||| ||| ||||| | |||  |||||| |||||| ||||||    
T  41387578 taaaatttgggtagccttcaccttacaagcctgttctgtaaggtttaattagacccaacacaaattctaagat 41387650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 39079798 - 39079724
Alignment:
Q  29 aattgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttag 103  Q
    |||||||||||  | |||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||    
T  39079798 aattgcggcatttgagttgtcttcatcacagcctccaacaccttcattgtgttgggtgtgaaggggtggatttag 39079724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 42 - 213
Target Start/End: Complemental strand, 25589226 - 25589056
Alignment:
Q  42 gggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatatgcagtattta 141  Q
    |||||| ||||| | |||||||||||| | ||  ||||||||||||||||||||| |||||||| ||| |||| |||| ||||||||| || ||| ||||    
T  25589226 gggttgccttcacttcagcctccaacatcctcactgtgttgggtgtgaaggggtgaatttagtc-cacattgcttggatatatggcatgtgtagtgttta 25589128  T
Q  142 taaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaaga 213  Q
    |||| |||||| |||  |  ||||||||||  ||||||| |   ||||||| | |||||||||||| |||||    
T  25589127 taaaacttgggcagccctctccttacaagccggttttgtaatactgagttaggtccaacccaaattctaaga 25589056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 29 - 239
Target Start/End: Complemental strand, 14596361 - 14596152
Alignment:
Q  29 aattgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggca 128  Q
    |||||||||||  |||||  ||||||||| ||||||||||  ||| | ||||| |||||||| |||  |||||| || ||| |||||| || ||| |||     
T  14596361 aattgcggcatttgggttaccttcattgctgcctccaacattttcatcgtgttcggtgtgaatgggcagatttattcccacattgcctagagataaggct 14596262  T
Q  129 tatgcagtatttataaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagccta 228  Q
    |  | ||| |||| |||||||||| |||  | |||||||||||  |||| || ||||||||||| |||||| | ||||||||||||| ||| ||||||||    
T  14596261 ttcgtagtgtttagaaagcttgggcagccctcaccttacaagccggttt-gtaaggttgagttaggcccaatcaaaattttaagatgatattagagccta 14596163  T
Q  229 tcttatatctg 239  Q
    || || |||||    
T  14596162 tcctagatctg 14596152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 69 - 229
Target Start/End: Complemental strand, 21033960 - 21033799
Alignment:
Q  69 ccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatatgcagtatttat-aaagcttgggtagcagttaccttac 167  Q
    ||||| || ||||| ||||||||||||| |||||||||||| |||||| || ||||||||| ||  || ||||| |||||||||| |||  | ||||||     
T  21033960 ccttcattatgttgtgtgtgaaggggtgaatttagtctcacattgcctagagatatggcatttgtggtgtttataaaagcttgggcagccctcaccttaa 21033861  T
Q  168 aagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctat 229  Q
    |||| | |||||| ||||||||||| || ||||  ||||| |||| |||||| | |||||||    
T  21033860 aagccaattttgtaaggttgagttaggctcaactgaaattctaagttggtattaaagcctat 21033799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 46870273 - 46870370
Alignment:
Q  54 ttgcagcctccaacaccttcgttgtgttgggtgtgaagggg-tggatttagtctcactttgcctggacatatggcatatgcagtatttataaagcttg 150  Q
    |||||||||||||||| ||| |||| | ||||||||||||| ||||||||||| ||| |||||| |  ||||||||| || |||||||||||||||||    
T  46870273 ttgcagcctccaacactttcattgtttagggtgtgaagggggtggatttagtcccacattgcctagggatatggcatgtgtagtatttataaagcttg 46870370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 41709967 - 41710029
Alignment:
Q  43 ggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||||||||||||| |||||||||||||| ||||||||| | ||| |||||||||||||||    
T  41709967 ggttgtcttcattgcaacctccaacaccttcattgtgttggctttgagggggtggatttagtc 41710029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 257416 - 257360
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  257416 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtc 257360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 43168042 - 43167986
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  43168042 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtc 43167986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 46753062 - 46753138
Alignment:
Q  29 aattgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||| ||||  |||||| |||||| |||||||||||||  ||| ||||||||||||||||||||| |||||||||    
T  46753062 aattgctgcatttgggttgccttcatcgcagcctccaacatgttccttgtgttgggtgtgaaggggtagatttagtc 46753138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 147
Target Start/End: Original strand, 28359018 - 28359137
Alignment:
Q  29 aattgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtg-aaggggtggatttagtctcactttgcctggacatatggc 127  Q
    |||||||||||  |||||  ||||||||||||||||||||||||| || | ||||||||| || ||||||||| |||| ||| |||||| || |||| ||    
T  28359018 aattgcggcatttgggtttccttcattgcagcctccaacaccttcattattttgggtgtgaaatgggtggattcagtcccacattgcctagagatatagc 28359117  T
Q  128 atatgcagtatttataaagc 147  Q
     | || ||| ||||||||||    
T  28359118 ctgtgtagtgtttataaagc 28359137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 105
Target Start/End: Original strand, 28909988 - 28910043
Alignment:
Q  50 ttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  28909988 ttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtc 28910043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 192
Target Start/End: Original strand, 32000772 - 32000915
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatatgcagtatttataaagct 148  Q
    |||||||||||||| |||||||||| | ||||||| | ||| ||| ||||||||||| |||  ||| | || ||||| | | || ||| |||||||||||    
T  32000772 cttcattgcagccttcaacaccttcatggtgttggctttgaggggatggatttagtcccacaatgcttagagatatgtcctgtgtagtgtttataaagct 32000871  T
Q  149 tgggtagcagttaccttacaagctagttttgttaggttgagtta 192  Q
    |||| |||  | |||||||||||  ||||||| ||| |||||||    
T  32000872 tgggcagccctcaccttacaagccggttttgtaaggatgagtta 32000915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 49 - 199
Target Start/End: Complemental strand, 10406735 - 10406585
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatatgcagtatttataaagct 148  Q
    ||||||||||||||||||||| |||  |||||||| | ||| | ||||| ||||||||||| |  | | || ||||||| | || ||| ||||||||||     
T  10406735 cttcattgcagcctccaacactttcactgtgttggctttgaggcggtgggtttagtctcacatctcttagagatatggcctgtgtagtgtttataaagca 10406636  T
Q  149 tgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaa 199  Q
    |||| |||  | ||| |||||||| ||||||| ||| ||||||| ||||||    
T  10406635 tgggcagccctcaccgtacaagctggttttgtaaggatgagttaggcccaa 10406585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 29 - 147
Target Start/End: Original strand, 23721078 - 23721196
Alignment:
Q  29 aattgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggca 128  Q
    |||||||||||  |||||| |||||||||||||||||||| | || |||||||||   ||||||||||| ||||||| | | |||  | || |||||||     
T  23721078 aattgcggcatttgggttgccttcattgcagcctccaacaacatcattgtgttggacttgaaggggtgggtttagtccctcattgtttagaaatatggcc 23721177  T
Q  129 tatgcagtatttataaagc 147  Q
    |||| ||| ||||||||||    
T  23721178 tatgtagtgtttataaagc 23721196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 1661340 - 1661284
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||||||| ||| ||||| | ||| |||||||||||||||    
T  1661340 cttcattgcagcctccaacaccttcattgcgttggctttgacggggtggatttagtc 1661284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 1663753 - 1663698
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||||||| ||||||||| | || ||||||||||||||||    
T  1663753 cttcattgcagcctccaacaccttcattgtgttggctttg-aggggtggatttagtc 1663698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 14092050 - 14092010
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtga 89  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  14092050 cttcattgcagcctccaacaccttcattgtgttgggtgtga 14092010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 14402068 - 14402028
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtga 89  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  14402068 cttcattgcagcctccaacaccttcattgtgttgggtgtga 14402028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 41670823 - 41670879
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||||||||||||||||||| || ||||||||| | ||| |||||||||||||||    
T  41670823 cttcattgcagcctccaacaccctcattgtgttggctttgagggggtggatttagtc 41670879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 3973108 - 3973167
Alignment:
Q  42 gggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggattt 101  Q
    |||||| |||||||||||||| |||||||||| | ||||||||| ||| |||||||||||    
T  3973108 gggttgccttcattgcagccttcaacaccttcatcgtgttgggtttgagggggtggattt 3973167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 10193543 - 10193469
Alignment:
Q  31 ttgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||||||  |||||| ||| ||||||||||||||| ||||  |||||||| |||||| ||||||| |||||||    
T  10193543 ttgcggcatttgggttgccttaattgcagcctccaactcctttattgtgttgtgtgtgagggggtgggtttagtc 10193469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 29780102 - 29780162
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcac 109  Q
    ||||||||||||||||||||||||| ||||||||  | |||  | ||||||||||||||||    
T  29780102 cttcattgcagcctccaacaccttcattgtgttgactttgagagagtggatttagtctcac 29780162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 41670539 - 41670594
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||||||| |||||||||||||||||||||||| | || ||||| ||||||||||    
T  41670539 cttcattgcatcctccaacaccttcgttgtgttggctttg-aggggcggatttagtc 41670594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 40121763 - 40121712
Alignment:
Q  53 attgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagt 104  Q
    ||||||||||||||||||||  ||||||||| | ||| ||||||||||||||    
T  40121763 attgcagcctccaacacctttattgtgttggctttgagggggtggatttagt 40121712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 24966026 - 24965957
Alignment:
Q  161 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatc 230  Q
    |||||||| | | |||||||  |||||||||  | |||||||||||||| |||| |||||||||||||||    
T  24966026 accttacacgttggttttgtagggttgagttgggtccaacccaaattttgagatagtatcagagcctatc 24965957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 12305225 - 12305149
Alignment:
Q  29 aattgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||||||||  ||| || |||  ||||||||| |||||||||| ||||||||||| | || || |||||||||||    
T  12305225 aattgcggcatttgggctgacttatttgcagccttcaacaccttcattgtgttgggtttaaaaggatggatttagtc 12305149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 21048746 - 21048690
Alignment:
Q  161 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggt 217  Q
    ||||||||||| | |||| | ||||||||||| || ||||||||||| |||||||||    
T  21048746 accttacaagccaattttataaggttgagttaggctcaacccaaattctaagatggt 21048690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 27820913 - 27820957
Alignment:
Q  161 accttacaagctagttttgttaggttgagttacgcccaacccaaa 205  Q
    ||||||||||| |||||||| ||||||||||| ||| ||||||||    
T  27820913 accttacaagccagttttgtaaggttgagttaggccgaacccaaa 27820957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 70 - 371
Target Start/End: Complemental strand, 1206307 - 1206002
Alignment:
Q  70 cttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatatgcagtatttataaagcttgggtagcagttaccttacaa 169  Q
    |||| ||||||||||||||||||| || |||||||| ||| || ||| || ||||| | | || ||| |||||||||||| || |||  | |||||||||    
T  1206307 cttcattgtgttgggtgtgaagggatgaatttagtcccacatttcctagagatatgtcctgtgtagtgtttataaagcttaggcagccctcaccttacaa 1206208  T
Q  170 gctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatcttatatctgttgt--ggctttccgtatcgtctacacttc 267  Q
    ||| | ||||| ||| | ||||| | |||||||||||| ||||||||||||||| |||||| |||| |||||||  ||||||| | ||||||||| ||||    
T  1206207 gctggatttgtaaggctaagttaggtccaacccaaattctaagatggtatcagaacctatcctatacctgttgttaggctttctgcatcgtctacgcttc 1206108  T
Q  268 aggcttatt-gggaccgagtgtgaggggttgtggtggaaattctgccaccattg-tgaccacccctagctgcctaattaaggcatttgtgttgccttcat 365  Q
    | | | ||| ||| | |||  ||||||  |||| |||||||||||||  |||||  | || |||||||| ||||||||  |||||||| |||||||||||    
T  1206107 aagttcattcgggcctgagcatgagggtgtgtgttggaaattctgccttcattgcggtccgcccctagccgcctaattgcggcatttgggttgccttcat 1206008  T
Q  366 tgcagc 371  Q
    ||||||    
T  1206007 tgcagc 1206002  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 29 - 371
Target Start/End: Complemental strand, 1206033 - 1205688
Alignment:
Q  29 aattgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggca 128  Q
    |||||||||||  |||||| ||||||||||||||||| ||||||| | ||||| |||||||||||||||||||||||   |  ||| | || |||||||     
T  1206033 aattgcggcatttgggttgccttcattgcagcctccagcaccttcatcgtgttaggtgtgaaggggtggatttagtccatcaatgcttagagatatggcc 1205934  T
Q  129 tatgcagt-atttataaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcct 227  Q
    | || |||  |||||||| |||||| |||| |  | ||||||||  || |||| |||||||||||   |||||||||||| |||| | |||||| | | |    
T  1205933 t-tgtagtgttttataaaacttgggcagcactcgcattacaagccggtcttgtaaggttgagttagctccaacccaaattctaagttagtatcaaaactt 1205835  T
Q  228 atcttatatctgttg--tggctttccgtatcgtctacacttcaggcttatt-gggaccgagtgtgaggggttgtggtggaaattctgccaccattg-tga 323  Q
    ||| || ||||||||   ||||| ||| |||| | |||||||||| | ||| ||| ||||| |||||||  |||| |||||||||  ||  |||||  |     
T  1205834 atc-tagatctgttggtgggcttcccgcatcgcccacacttcaggttcattggggcccgagcgtgagggtgtgtgttggaaattccaccttcattgcagt 1205736  T
Q  324 ccacccctagctgcctaattaaggcatttgtgttgccttcattgcagc 371  Q
    ||||||||||| ||||||||  |||||||| ||| |||||||||||||    
T  1205735 ccacccctagccgcctaattgtggcatttgggtttccttcattgcagc 1205688  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 130824 - 130761
Alignment:
Q  42 gggttgtcttcattgcagcctccaaca-ccttcgttgtgttgggtgtgaaggggtggatttagt 104  Q
    |||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  130824 gggttgccttcattgcagcctccaacaaccttcattgtgttgggtgtgaaggggtggatttagt 130761  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 9602136 - 9602080
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||    
T  9602136 cttcattccagcttccaacaccttcattgtgttgggtgtgaaggggtggatttagtc 9602080  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 186
Target Start/End: Original strand, 18286842 - 18286977
Alignment:
Q  50 ttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatatgcagtatttataaagctt 149  Q
    ||||||||| ||||||||||||||   ||||||||||||||||||| ||||||||| ||| || ||| || ||||||| |||| |||  |||||||||||    
T  18286842 ttcattgcatcctccaacaccttcaccgtgttgggtgtgaaggggttgatttagtcccacatttcctagagatatggcctatgtagt-gttataaagctt 18286940  T
Q  150 gggtagcagttaccttacaagctagttttgttaggtt 186  Q
    ||| |||| |  |||||||| |  ||||||| |||||    
T  18286941 ggggagcactcgccttacaaaccggttttgtaaggtt 18286977  T

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Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 49 - 177
Target Start/End: Complemental strand, 1205699 - 1205570
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcc-tggacatatggcatatgcagtatttataaagc 147  Q
    |||||||||||||| |||||| ||| |||||||||||||||||||||||||| |||| |||  |||| | || |||||||||||| ||| ||  ||||||    
T  1205699 cttcattgcagcctacaacactttcattgtgttgggtgtgaaggggtggattcagtcccaccctgcctttgagatatggcatatgtagtgttcgtaaagc 1205600  T
Q  148 ttgggtagcagttaccttacaagctagttt 177  Q
    | ||| |||  | ||| ||||||| |||||    
T  1205599 tggggcagccttcaccctacaagccagttt 1205570  T

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Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 10418487 - 10418431
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  10418487 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtc 10418431  T

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Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 24055258 - 24055202
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  24055258 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtc 24055202  T

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Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 105
Target Start/End: Original strand, 1408967 - 1409022
Alignment:
Q  50 ttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  1408967 ttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtc 1409022  T

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Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 19054448 - 19054504
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||||||| ||||||||| | ||| |||||||| ||||||    
T  19054448 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggaattagtc 19054504  T

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Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 21043930 - 21043874
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||||||| ||||||| | | ||| |||||||||||||||    
T  21043930 cttcattgcagcctccaacaccttcattgtgtttgctttgagggggtggatttagtc 21043874  T

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Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 21067206 - 21067150
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||||||| ||||||| | | ||| |||||||||||||||    
T  21067206 cttcattgcagcctccaacaccttcattgtgtttgctttgagggggtggatttagtc 21067150  T

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Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 21088997 - 21088941
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||||||| ||||||| | | ||| |||||||||||||||    
T  21088997 cttcattgcagcctccaacaccttcattgtgtttgctttgagggggtggatttagtc 21088941  T

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Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 17096846 - 17096787
Alignment:
Q  50 ttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcac 109  Q
    |||||||||||||||||||||||| ||||||||| | ||| ||| | |||||||||||||    
T  17096846 ttcattgcagcctccaacaccttcattgtgttggctttgaggggatagatttagtctcac 17096787  T

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Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 32027 - 31966
Alignment:
Q  44 gttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||| ||||||||||| ||||||||||||| || |||||| | ||| |||||||||||||||    
T  32027 gttgccttcattgcagtctccaacaccttcattttgttggctttgagggggtggatttagtc 31966  T

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Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 9156250 - 9156197
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggattta 102  Q
    |||||||||| ||||||||||||||  |||||| ||| ||||||||||||||||    
T  9156250 cttcattgcatcctccaacaccttcactgtgttaggtttgaaggggtggattta 9156197  T

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Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 1744991 - 1744935
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||||||| ||||||| | | ||| |||||||| ||||||    
T  1744991 cttcattgcagcctccaacaccttcattgtgtttgctttgagggggtggagttagtc 1744935  T

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Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 9216785 - 9216841
Alignment:
Q  44 gttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatt 100  Q
    |||||||||||||||| | ||||||| ||| ||||| | ||||||||||||||||||    
T  9216785 gttgtcttcattgcagtcaccaacacattcattgtgcttggtgtgaaggggtggatt 9216841  T

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Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 10733587 - 10733531
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||| ||||||||||||||| |||| ||||||||| | ||| |||||||||||||||    
T  10733587 cttcgttgcagcctccaacatcttcattgtgttggctttgagggggtggatttagtc 10733531  T

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Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 12134632 - 12134576
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||||||||||||||| |||||| ||||||||| | ||| |||||||| ||||||    
T  12134632 cttcattgcagcctccaataccttcattgtgttggctttgacggggtggacttagtc 12134576  T

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Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 32215863 - 32215919
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||||||| || |||||| | |||  ||||||||||||||    
T  32215863 cttcattgcagcctccaacaccttcattatgttggttttgagagggtggatttagtc 32215919  T

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Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 9237114 - 9237169
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagt 104  Q
    ||||||||||  ||||||||||||| |||||||| ||||||||  |||||||||||    
T  9237114 cttcattgcactctccaacaccttcattgtgttgtgtgtgaagtagtggatttagt 9237169  T

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Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 12308635 - 12308580
Alignment:
Q  54 ttgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcac 109  Q
    ||||| |||||||||||||| |||||||| || ||||  |||||||||||||||||    
T  12308635 ttgcatcctccaacaccttcattgtgttgagtttgaaaaggtggatttagtctcac 12308580  T

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Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 15544645 - 15544604
Alignment:
Q  42 gggttgtcttcattgcagcctccaacaccttcgttgtgttgg 83  Q
    |||||| |||||||||||||||||| ||||||||| ||||||    
T  15544645 gggttgccttcattgcagcctccaataccttcgttatgttgg 15544604  T

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Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 19385574 - 19385642
Alignment:
Q  161 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatc 230  Q
    ||||| |||||| |||||||  |||||||||| || || |||||||| ||||||||||||| ||||||||    
T  19385574 acctttcaagctggttttgtatggttgagttaggctca-cccaaattctaagatggtatcaaagcctatc 19385642  T

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Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 8143973 - 8144028
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||||||||||||||||||||||   ||||||| | || ||||||||||||||||    
T  8143973 cttcattgcagcctccaacaccttcaacgtgttggctttg-aggggtggatttagtc 8144028  T

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Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 19753749 - 19753697
Alignment:
Q  53 attgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||||||| |||||||||| ||||||| | | ||| |||||||||||||||    
T  19753749 attgcagcctgcaacaccttcattgtgttagctttgagggggtggatttagtc 19753697  T

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Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 42 - 213
Target Start/End: Complemental strand, 30491107 - 30490939
Alignment:
Q  42 gggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatatgcagtattta 141  Q
    |||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||| |||||| || ||||||| | ||  || ||||    
T  30491107 gggttgccttcattgcagcctccaacaccttcaatgtgttgggtgtgaaggggtggatttagtc-cacattgcctagatatatggcctgtg--gtgttta 30491011  T
Q  142 taaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaaga 213  Q
    |||||  |||| | |  | |||||||||||   ||| || ||||||||||| |||||||||||||| |||||    
T  30491010 taaagtctgggaacccctcaccttacaagccgttttcgtaaggttgagttaggcccaacccaaattctaaga 30490939  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 44 - 205
Target Start/End: Complemental strand, 52043232 - 52043071
Alignment:
Q  44 gttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatatgcagtatttata 143  Q
    |||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||| |||||   | ||||||  | |  ||| ||||||    
T  52043232 gttgtcttcattgcagcctccaacaccttcattgtatcgggtgtgaaggggtggatttagtctcacattgccaaaagatatggtctgtttagtgtttata 52043133  T
Q  144 aagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaa 205  Q
    ||||||  | |||  | |||||||||||  ||||| | | ||||||||| ||||||||||||    
T  52043132 aagcttatgcagccctcaccttacaagccggttttataaagttgagttaagcccaacccaaa 52043071  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 42 - 199
Target Start/End: Original strand, 48046304 - 48046462
Alignment:
Q  42 gggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtg-aaggggtggatttagtctcactttgcctggacatatggcatatgcagtattt 140  Q
    |||||| |||||||||| ||||||||||||||  | ||||||||||| ||||||||||||||||| ||| |||||| || ||||||||| || ||| |||    
T  48046304 gggttgccttcattgcaacctccaacaccttcactatgttgggtgtgaaaggggtggatttagtcccacattgcctagagatatggcatgtgtagtgttt 48046403  T
Q  141 ataaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaa 199  Q
    | |||| |||||  ||  | |||||||||||  ||||||| | ||||||||| ||||||    
T  48046404 acaaagtttgggccgccctcaccttacaagccggttttgtaacgttgagttaggcccaa 48046462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 26942756 - 26942680
Alignment:
Q  29 aattgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||||| ||  ||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||    
T  26942756 aattgcggtatttgggttgtcttcattgcaacctccaacacattcattgtgttgggtgtgaaggggtggatttagtc 26942680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 49 - 199
Target Start/End: Complemental strand, 23311618 - 23311469
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatatgcagtatttataaagct 148  Q
    |||| ||||||||||||||||||| || ||||||||| |||||||||||||||||||  || |||  | || ||||||||| || ||| ||||||||||     
T  23311618 cttctttgcagcctccaacacctttgt-gtgttgggtttgaaggggtggatttagtcctacattgtttagagatatggcatgtgtagtgtttataaagcg 23311520  T
Q  149 tgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaa 199  Q
    |||| |||  |||||||||||||  ||||||| ||| ||| ||| ||||||    
T  23311519 tgggcagcctttaccttacaagccggttttgtaaggatgacttaggcccaa 23311469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 45 - 201
Target Start/End: Complemental strand, 26943024 - 26942869
Alignment:
Q  45 ttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatatgcagtatttataa 144  Q
    |||||||||||||||||| |||||||||  ||||||||||||||||| |||| ||||||||||||  ||||| || ||||||  | || ||| |||||||    
T  26943024 ttgtcttcattgcagccttcaacacctttattgtgttgggtgtgaagaggtgaatttagtctcac-atgcctagagatatggtctgtgtagtgtttataa 26942926  T
Q  145 agcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacc 201  Q
    ||||| || | |  | |||||||||||   |||||| ||| ||||||| ||||||||    
T  26942925 agcttaggcacccctcaccttacaagccgattttgtaaggatgagttaggcccaacc 26942869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 243
Target Start/End: Complemental strand, 54595525 - 54595329
Alignment:
Q  50 ttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatatgcagtatttataaagctt 149  Q
    |||||| ||||| ||||||||||| ||||||||| ||||||||| |||| ||| || ||| |||||| || | | ||| | || |||  || |||||||     
T  54595525 ttcattacagccaccaacaccttcattgtgttggttgtgaagggatggaattaatcccacgttgcctagagacacggcttgtgtagtgcttttaaagctc 54595426  T
Q  150 gggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattt---taagatggtatcagagcctatcttatatctgttgt 243  Q
    ||| |||  | ||||||||||| |||||||  ||||||||||| |||||||||||| ||    |||||||||| |||||||||| || || ||||||    
T  54595425 gggcagccctcaccttacaagcaagttttgcgaggttgagttaagcccaacccaaaattataaaagatggtattagagcctatcctagatttgttgt 54595329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 26942528 - 26942469
Alignment:
Q  42 gggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggattt 101  Q
    ||||||||||||||||| |||||||||| ||| ||||||||||| |||||||||||||||    
T  26942528 gggttgtcttcattgcaacctccaacacattcattgtgttgggtatgaaggggtggattt 26942469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 17912812 - 17912877
Alignment:
Q  165 tacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatc 230  Q
    |||||||  |||||||  |||||||||| |||||||||||||||||||||||||| ||||||||||    
T  17912812 tacaagccggttttgtagggttgagttaggcccaacccaaattttaagatggtatgagagcctatc 17912877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 15665108 - 15665164
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  15665108 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtc 15665164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 45427401 - 45427345
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  45427401 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtc 45427345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 53738357 - 53738301
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  53738357 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtc 53738301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 230
Target Start/End: Complemental strand, 3137787 - 3137604
Alignment:
Q  44 gttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatatgcagtatttata 143  Q
    |||| |||||||||||||| |||||||||| ||||||| ||||||||  |||||||||||||  || || ||| || ||||||| |||| ||  | ||||    
T  3137787 gttgccttcattgcagcctgcaacaccttcattgtgtt-ggtgtgaattggtggatttagtccgacattccctagagatatggcctatgtag--tgtata 3137691  T
Q  144 aagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatc 230  Q
    ||||||| | |||  | ||||| |||||  ||||| |  ||| |||||| | |||||||||||| |||||| ||||  |||||||||    
T  3137690 aagcttgtgcagccctcaccttgcaagccggttttttatggtcgagttaggtccaacccaaattctaagatagtatttgagcctatc 3137604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 46332702 - 46332620
Alignment:
Q  29 aattgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactt 111  Q
    |||||||||||  |||||| |||||||||||||| |||||| ||| |||  |||||| | ||||||||||||||||| |||||    
T  46332702 aattgcggcatttgggttgccttcattgcagccttcaacacgttcattggattgggttttaaggggtggatttagtcccactt 46332620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 54595215 - 54595145
Alignment:
Q  44 gttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgc 114  Q
    |||| |||||||||| |||||||||||||| |||||  |||||||||||||||||| ||||| ||| ||||    
T  54595215 gttgccttcattgcaacctccaacaccttcattgtgcggggtgtgaaggggtggatatagtcccacattgc 54595145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 24001541 - 24001598
Alignment:
Q  173 agttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatc 230  Q
    |||||||| ||||||||||| |||||||||||||| |||||| ||||||||| |||||    
T  24001541 agttttgtaaggttgagttaagcccaacccaaattctaagatagtatcagagtctatc 24001598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 45427084 - 45427031
Alignment:
Q  50 ttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttag 103  Q
    |||||||||||||||||||||||| ||||||||| | ||| |||||||||||||    
T  45427084 ttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttag 45427031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 990997 - 991049
Alignment:
Q  53 attgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  990997 attgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtc 991049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 991163 - 991215
Alignment:
Q  53 attgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  991163 attgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtc 991215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 151
Target Start/End: Complemental strand, 3137099 - 3136992
Alignment:
Q  43 ggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatatgcagtatttat 142  Q
    ||||| |||||||| ||||||||||| | || ||||| |||||  ||| |||||||||||||| ||| |||||| || | ||||| |||||||| |||||    
T  3137099 ggttgccttcattgtagcctccaacatcctcattgtgctgggttcgaatgggtggatttagtcccacattgcctagaga-atggcctatgcagtgtttat 3137001  T
Q  143 aaagcttgg 151  Q
    | |||||||    
T  3137000 atagcttgg 3136992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 22867039 - 22867095
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||||||||| |||||||||||||||||| ||| | ||| |||||||||||||||    
T  22867039 cttcattgcagcttccaacaccttcgttgtgctggctttgagggggtggatttagtc 22867095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 29669511 - 29669456
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||||||| ||||||||| | || ||||||||||||||||    
T  29669511 cttcattgcagcctccaacaccttcattgtgttggctttg-aggggtggatttagtc 29669456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 29669826 - 29669771
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||||||| ||||||||| | || ||||||||||||||||    
T  29669826 cttcattgcagcctccaacaccttcattgtgttggctttg-aggggtggatttagtc 29669771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 43971994 - 43972050
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||||||| ||||||||| | | | |||||||||||||||    
T  43971994 cttcattgcagcctccaacaccttcattgtgttggctttaagggggtggatttagtc 43972050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 43972310 - 43972366
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||||||| ||||||||| | ||| |||||| ||||||||    
T  43972310 cttcattgcagcctccaacaccttcattgtgttggttttgagggggtgaatttagtc 43972366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 50857971 - 50858023
Alignment:
Q  53 attgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  50857971 attgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtc 50858023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 50858287 - 50858339
Alignment:
Q  53 attgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  50858287 attgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtc 50858339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 53740141 - 53740193
Alignment:
Q  53 attgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  53740141 attgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtc 53740193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 56509564 - 56509620
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||||||||| |||||||||||| ||||||||| | ||| |||||||||||||||    
T  56509564 cttcattgcagcttccaacaccttcattgtgttggctttgagggggtggatttagtc 56509620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 39778422 - 39778352
Alignment:
Q  162 ccttacaagctagttttgttagg-ttgagttacgcccaacccaaa-ttttaagatggtatcagagcctatc 230  Q
    ||||||||||| ||||||| ||| |||||||| |||||||||||| ||||||| |||||||||||| ||||    
T  39778422 ccttacaagctggttttgtaagggttgagttaggcccaacccaaaattttaagctggtatcagagcatatc 39778352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 44898871 - 44898834
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtg 86  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  44898871 cttcattgcagcctccaacaccttcattgtgttgggtg 44898834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 990506 - 990558
Alignment:
Q  53 attgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||| ||||||||| | ||| |||||| ||||||||    
T  990506 attgcagcctccaacaccttcattgtgttggctttgagggggtgaatttagtc 990558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 29734516 - 29734572
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||||||| ||||||||  | ||| |||||| ||||||||    
T  29734516 cttcattgcagcctccaacaccttcattgtgttgactttgagggggtgaatttagtc 29734572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 32988419 - 32988363
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||| ||||||||||| ||||||||| | ||| | |||||||||||||    
T  32988419 cttcattgcagcccccaacaccttcattgtgttggctttgaggtggtggatttagtc 32988363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 46676685 - 46676745
Alignment:
Q  161 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatca 221  Q
    |||||||||| | |||||||  |||||||||| | |||||||||||||||||||| |||||    
T  46676685 accttacaagatggttttgtagggttgagttaggtccaacccaaattttaagatgatatca 46676745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 48843166 - 48843110
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||||||||||| |||||||||| || |||||| | ||| |||||||||||||||    
T  48843166 cttcattgcagccttcaacaccttcattttgttggctctgagggggtggatttagtc 48843110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 52214574 - 52214626
Alignment:
Q  53 attgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||| ||||||||| | ||| |||||||| ||||||    
T  52214574 attgcagcctccaacaccttcattgtgttggctttgagggggtggaattagtc 52214626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 22572446 - 22572493
Alignment:
Q  184 gttgagttacgcccaacccaaattttaagatggtatcagagcctatct 231  Q
    ||||||||| | |||||||||| ||||||||| |||||||||||||||    
T  22572446 gttgagttaggaccaacccaaaatttaagatgatatcagagcctatct 22572493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 42788090 - 42788140
Alignment:
Q  54 ttgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagt 104  Q
    |||||||||||||||||||| ||| ||||| | ||||||||| ||||||||    
T  42788090 ttgcagcctccaacaccttcattgggttggatttgaaggggtagatttagt 42788140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 49190215 - 49190161
Alignment:
Q  176 tttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatc 230  Q
    ||||| || |||||||  || ||||||||||| ||||||||||||||||||||||    
T  49190215 tttgtaagattgagtttggctcaacccaaattctaagatggtatcagagcctatc 49190161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 3137496 - 3137435
Alignment:
Q  182 aggttgagttacgcccaacccaaattttaagatggtatcagagcctatcttatatctgttgt 243  Q
    ||||||| ||| ||||||||||||||  ||||| |||| |||||||||| || |||||||||    
T  3137496 aggttgatttaggcccaacccaaattccaagatagtattagagcctatcctaaatctgttgt 3137435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 23018425 - 23018485
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcac 109  Q
    |||||||||| |||||||||||||| ||||||||| | | | |||||| ||||| ||||||    
T  23018425 cttcattgcaacctccaacaccttcattgtgttggctttaagggggtgaatttaatctcac 23018485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 36558615 - 36558559
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||| ||| ||||||||||||||  |||||||| | ||| |||||||||||||||    
T  36558615 cttcatagcaacctccaacaccttcactgtgttggctttgagggggtggatttagtc 36558559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 50816741 - 50816705
Alignment:
Q  183 ggttgagttacgcccaacccaaattttaagatggtat 219  Q
    |||||||||| |||||||||||||||| |||||||||    
T  50816741 ggttgagttaggcccaacccaaattttgagatggtat 50816705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 44 - 189
Target Start/End: Original strand, 18183416 - 18183561
Alignment:
Q  44 gttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatatgcagtatttata 143  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||     |||||| || ||||||| | || ||| ||||||    
T  18183416 gttgccttcattgcagcctccaacaccttcattgtgttgggtgtgatgggatggatttagtcctgaattgccttgagatatggcttgtgtagtgtttata 18183515  T
Q  144 aagcttgggtagcagttaccttacaagctagttttgttaggttgag 189  Q
    ||||||||| |||  | |||||||||||  ||||||| ||||||||    
T  18183516 aagcttgggcagccttcaccttacaagccggttttgtaaggttgag 18183561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 59 - 197
Target Start/End: Original strand, 14407953 - 14408092
Alignment:
Q  59 gcctccaacaccttcgttgtgttgggtgtgaagggg-tggatttagtctcactttgcctggacatatggcatatgcagtatttataaagcttgggtagca 157  Q
    |||| |||||||||| |||||||| ||||||||||| ||||||| ||||||| ||| || || ||||||  | || ||| ||||||||||||| | | |     
T  14407953 gccttcaacaccttcattgtgttgagtgtgaaggggttggatttggtctcacattgtctagagatatggtctgtgtagtgtttataaagcttgtgcaacc 14408052  T
Q  158 gttaccttacaagctagttttgttaggttgagttacgccc 197  Q
     |||||||||||||  ||||||| ||||||||||| ||||    
T  14408053 cttaccttacaagccggttttgtaaggttgagttaggccc 14408092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 18902013 - 18901957
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  18902013 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtc 18901957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 17509064 - 17509118
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttag 103  Q
    ||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||    
T  17509064 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttag 17509118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 230
Target Start/End: Complemental strand, 37253429 - 37253243
Alignment:
Q  42 gggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatatgcagtattta 141  Q
    |||||| |||||||||||||||||| ||||||||| ||||||||||  | |||| |||||||||  || ||  || || |||   ||| || ||| |||     
T  37253429 gggttgccttcattgcagcctccaataccttcgttatgttgggtgt--aagggtagatttagtccaacattatctagaaatactacatgtgtagtgtttg 37253332  T
Q  142 taaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatc 230  Q
    ||||||||||| | || | |||| ||||||  ||||||| ||||| ||||| | |||||||||| | |||||| |||||| || |||||    
T  37253331 taaagcttgggcaacactcacctcacaagccggttttgtaaggttcagttaggtccaacccaaactataagattgtatcataggctatc 37253243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 3004056 - 3004000
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||| |||||||||||||||||| ||||||||||||||| ||| ||| |||||||    
T  3004056 cttcatcgcagcctccaacaccttcattgtgttgggtgtgaggggatgggtttagtc 3004000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 3976616 - 3976564
Alignment:
Q  53 attgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  3976616 attgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtc 3976564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 5511970 - 5511894
Alignment:
Q  29 aattgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||||||||  |||||| |||||||  ||| |||||| ||||| |||||||| ||||||||||||| ||||||||    
T  5511970 aattgcggcattagggttgccttcattatagcttccaacgccttcattgtgttgtgtgtgaaggggtgtatttagtc 5511894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 11339841 - 11339789
Alignment:
Q  53 attgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||| ||||||| |||| ||| ||||||||||||||    
T  11339841 attgcagcctccaacaccttcattgtgttaggtgcgaaagggtggatttagtc 11339789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 132
Target Start/End: Original strand, 14522450 - 14522538
Alignment:
Q  44 gttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggcatatg 132  Q
    ||||| ||||||||||||||||| |||||| ||||| ||||||| ||||| |||||||| || ||| |||| | || ||||||| ||||    
T  14522450 gttgtattcattgcagcctccaataccttcattgtgatgggtgtaaagggctggatttaatcccacattgcatagatatatggcctatg 14522538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 15820246 - 15820194
Alignment:
Q  53 attgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  15820246 attgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtc 15820194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 39583435 - 39583511
Alignment:
Q  29 aattgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||||||||  |||||| ||||||||||| ||||||||| | | |||||||  |||||||| |||||||||||||    
T  39583435 aattgcggcatttgggttgccttcattgcagtctccaacacttccattgtgttcagtgtgaagaggtggatttagtc 39583511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 43169201 - 43169253
Alignment:
Q  53 attgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  43169201 attgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtc 43169253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 3008426 - 3008472
Alignment:
Q  161 accttacaagctagttttgttaggttgagttacgcccaacccaaatt 207  Q
    ||||||||||| |||||||| ||||||||||| ||||||||||||||    
T  3008426 accttacaagccagttttgtaaggttgagttaggcccaacccaaatt 3008472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 43688575 - 43688510
Alignment:
Q  45 ttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaagggg-tggatttagtctcac 109  Q
    ||||||||||||||||||||||||||||| || |||||| | ||| |||| |||||||| ||||||    
T  43688575 ttgtcttcattgcagcctccaacaccttcattatgttggctttgagggggatggatttaatctcac 43688510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 3976300 - 3976248
Alignment:
Q  53 attgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||| || |||||| | ||| |||||||||||||||    
T  3976300 attgcagcctccaacaccttcattatgttggctttgagggggtggatttagtc 3976248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 3977148 - 3977096
Alignment:
Q  53 attgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||| ||||||||| ||||||||| | ||| |||||||||||||||    
T  3977148 attgcagcctctaacaccttcattgtgttggctctgagggggtggatttagtc 3977096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 7252240 - 7252300
Alignment:
Q  163 cttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcaga 223  Q
    |||||||| | |||||||  |||||||||| || ||||||||||| |||||||||||||||    
T  7252240 cttacaagttggttttgtagggttgagttaggctcaacccaaattctaagatggtatcaga 7252300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 7877799 - 7877855
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||| |||||||| |||| ||||||||| | ||| |||||||||||||||    
T  7877799 cttcattgcagtctccaacatcttcattgtgttggctttgagggggtggatttagtc 7877855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 9889495 - 9889423
Alignment:
Q  29 aattgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggattt 101  Q
    ||||| |||||  |||||| |||||||||| ||||| ||| |||| |||| |||||||||||||| |||||||    
T  9889495 aattgtggcatttgggttgccttcattgcaacctccgacatcttcattgtattgggtgtgaagggatggattt 9889423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 18959516 - 18959576
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcac 109  Q
    ||||||||||||| ||| | ||||| ||||| ||||||||| ||||||| |||||||||||    
T  18959516 cttcattgcagccaccagcgccttcattgtgctgggtgtgagggggtgggtttagtctcac 18959576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 21214030 - 21213978
Alignment:
Q  53 attgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||| ||||||||||||||| ||||||||| | ||| |||||||||||||||    
T  21214030 attgccgcctccaacaccttcattgtgttggctttgagggggtggatttagtc 21213978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 23054285 - 23054337
Alignment:
Q  53 attgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    |||||||||||||||||||||  |||||||| | ||| |||||||||||||||    
T  23054285 attgcagcctccaacaccttcaatgtgttggctttgagggggtggatttagtc 23054337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 43195743 - 43195795
Alignment:
Q  53 attgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||||||||||||||||||| ||||||||| | ||| ||||| |||||||||    
T  43195743 attgcagcctccaacaccttcattgtgttggctttgagggggtagatttagtc 43195795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 43275510 - 43275566
Alignment:
Q  174 gttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatc 230  Q
    ||||||| ||||| |||||  ||||||||||| ||||| ||||||||||||||||||    
T  43275510 gttttgtaaggttcagttagtcccaacccaaagtttaatatggtatcagagcctatc 43275566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 93
Target Start/End: Original strand, 1544105 - 1544152
Alignment:
Q  46 tgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggg 93  Q
    ||||||| ||||  |||||||||||||| |||||||||||||||||||    
T  1544105 tgtcttctttgccacctccaacaccttcattgtgttgggtgtgaaggg 1544152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 230
Target Start/End: Original strand, 3185961 - 3185992
Alignment:
Q  199 acccaaattttaagatggtatcagagcctatc 230  Q
    ||||||||||||||||||||||||||||||||    
T  3185961 acccaaattttaagatggtatcagagcctatc 3185992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 369
Target Start/End: Complemental strand, 9889513 - 9889466
Alignment:
Q  322 gaccacccctagctgcctaattaaggcatttgtgttgccttcattgca 369  Q
    |||||||||||||| |||||||  |||||||| |||||||||||||||    
T  9889513 gaccacccctagcttcctaattgtggcatttgggttgccttcattgca 9889466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 370
Target Start/End: Complemental strand, 20135163 - 20135120
Alignment:
Q  327 cccctagctgcctaattaaggcatttgtgttgccttcattgcag 370  Q
    |||| ||||||||||||  |||||||||||||||||||||||||    
T  20135163 ccccaagctgcctaattgtggcatttgtgttgccttcattgcag 20135120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 21373920 - 21373979
Alignment:
Q  31 ttgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaa 90  Q
    |||||||||  | |||| |||||||||||||||||||||| |  ||||||||||||||||    
T  21373920 ttgcggcatttgtgttgccttcattgcagcctccaacaccattattgtgttgggtgtgaa 21373979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 371
Target Start/End: Original strand, 21373907 - 21373949
Alignment:
Q  329 cctagctgcctaattaaggcatttgtgttgccttcattgcagc 371  Q
    |||||||||||| ||  ||||||||||||||||||||||||||    
T  21373907 cctagctgcctacttgcggcatttgtgttgccttcattgcagc 21373949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 33070357 - 33070431
Alignment:
Q  29 aattgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttag 103  Q
    |||||||||||  ||||||||| ||||||| ||| || ||||||| || |||||||||||| | |||| ||||||    
T  33070357 aattgcggcatttgggttgtctccattgcatccttcagcaccttcattatgttgggtgtgaggaggtgaatttag 33070431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 5424905 - 5424872
Alignment:
Q  49 cttcattgcagcctccaacaccttcgttgtgttg 82  Q
    ||||||||||||||||||||||||| ||||||||    
T  5424905 cttcattgcagcctccaacaccttcattgtgttg 5424872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 21216516 - 21216459
Alignment:
Q  173 agttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatc 230  Q
    ||||||||  |||||||||| |||||| | |||||||||||||||||  |||||||||    
T  21216516 agttttgtggggttgagttaagcccaatcaaaattttaagatggtattggagcctatc 21216459  T

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Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 35872850 - 35872883
Alignment:
Q  69 ccttcgttgtgttgggtgtgaaggggtggattta 102  Q
    ||||| ||||||||||||||||||||||||||||    
T  35872850 ccttcattgtgttgggtgtgaaggggtggattta 35872883  T

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Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 21214346 - 21214294
Alignment:
Q  53 attgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 105  Q
    ||||| |||||||| |||||| ||||||||| | ||| |||||||||||||||    
T  21214346 attgccgcctccaaaaccttcattgtgttggctttgagggggtggatttagtc 21214294  T

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Target: scaffold0103 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 47490 - 47438
Alignment:
Q  75 ttgtgttgggtgtgaaggggtggatttagtctcactttgcctggacatatggc 127  Q
    ||||||||||||||||| |||||||||||||||||| ||| |||| |||||||    
T  47490 ttgtgttgggtgtgaagtggtggatttagtctcactctgcttggagatatggc 47438  T

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