View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_41 (Length: 445)
Name: NF1408_low_41
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_41 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 7e-96; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 86 - 282
Target Start/End: Complemental strand, 4832644 - 4832447
Alignment:
| Q |
86 |
tcattgtggctgggtgttctgttttgaagccctttgaaattgattggatcttgtgtgatcaatggctgaataaatctcaagttgttttcaattaatgcgc |
185 |
Q |
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| T |
4832644 |
tcattgtggctgggtgttctgttttgaagccctttgaaattgattggatcttgtgtgatcaatggctgaataaatctcaagttgttttcaattaatacgc |
4832545 |
T |
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| Q |
186 |
caaagcaaggttagcatgcttgggttgaatgaatatccaagtctcacagcttagcttaacccaacacggagttagtgtcggaaa-cccagggatgtca |
282 |
Q |
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| T |
4832544 |
caaagcaaggttagcatgcttgggttgaatgaatatccaagtctcacagcttagcttaccccaactcggagttagtgtcggaaaccccagggatgtca |
4832447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 96 - 181
Target Start/End: Complemental strand, 4831232 - 4831146
Alignment:
| Q |
96 |
tgggtgttctgttttgaagccctttgaaattgattggatcttgtgtgatcaat-ggctgaataaatctcaagttgttttcaattaat |
181 |
Q |
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| T |
4831232 |
tgggtgttctcttttgaagccctttgaaattgattggatcttgtgtgatcaatgggctgaataaatctcaagttattttcaattaat |
4831146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 282 - 341
Target Start/End: Complemental strand, 4832421 - 4832362
Alignment:
| Q |
282 |
aaatctcaaagctttctatatttaagaaaataattacacaatattagaatatcttcatcg |
341 |
Q |
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| T |
4832421 |
aaatctcaaagctttctatatttaagagaataactacacaatattagaatatcttcatcg |
4832362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 4833996 - 4833936
Alignment:
| Q |
31 |
taagtactccatgaagttttaataatgttaactcaatgtgcacgagccctttgattcattgtgg |
94 |
Q |
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| T |
4833996 |
taagtactccatgaagttttaat---gttaactcaatgtacatgagccctttgattcattgtgg |
4833936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 282 - 340
Target Start/End: Complemental strand, 4838914 - 4838857
Alignment:
| Q |
282 |
aaatctcaaagctttctatatttaagaaaataattacacaatattagaatatcttcatc |
340 |
Q |
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| T |
4838914 |
aaatctcaaagctttctatattt-agaaaataactacacaatattaaaatgtcttcatc |
4838857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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