View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1408_low_42 (Length: 443)

Name: NF1408_low_42
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1408_low_42
NF1408_low_42
[»] chr3 (3 HSPs)
chr3 (97-316)||(46993653-46993872)
chr3 (30-105)||(46994149-46994224)
chr3 (382-443)||(37610489-37610550)
[»] chr6 (1 HSPs)
chr6 (30-208)||(2038873-2039062)
[»] chr5 (2 HSPs)
chr5 (38-208)||(25074627-25074808)
chr5 (38-208)||(25132596-25132777)
[»] chr7 (2 HSPs)
chr7 (382-443)||(37236128-37236189)
chr7 (382-443)||(13598986-13599047)
[»] chr1 (1 HSPs)
chr1 (382-443)||(17244519-17244580)
[»] chr8 (1 HSPs)
chr8 (205-262)||(9484451-9484509)
[»] chr4 (1 HSPs)
chr4 (206-258)||(52721113-52721166)


Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 97 - 316
Target Start/End: Complemental strand, 46993872 - 46993653
Alignment:
Q  97 taaatactaattacagattaaactatttatttgagtgggaatataatttcataacgtcgctactatagatgattttatgggtgtttcaaatttaggcata 196  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  46993872 taaatactaattaca-attaaactatttatttgagtgggaatataatttcataacgtcgctactatagattattttatgggtgtttcaaatttaggcata 46993774  T
Q  197 acatggaggatgggtcacttgattttttaat-aagaagaataagatcaatttttacggcttatagaaaacgttgcctaagttcaaaactgaaaagaaata 295  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||    
T  46993773 acatggaggatgggtcacttgattttttaatcaagaaggataagatcaatttttacagcttatagaaaacactgcctaagttcaaaactgaaaagaaata 46993674  T
Q  296 atcttggaatacattgttata 316  Q
    |||||||||||||||||||||    
T  46993673 atcttggaatacattgttata 46993653  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 46994224 - 46994149
Alignment:
Q  30 ctttttctaccctttcatactctactagttgtgatatgaggacaccatctccccattagtattattataaatacta 105  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||    
T  46994224 ctttttctaccctttcatactctactagttgtgatatgagtacaccatctctccatttgtattattataaatacta 46994149  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 382 - 443
Target Start/End: Original strand, 37610489 - 37610550
Alignment:
Q  382 atggttaaggtggagagattgattttgggtttgagttgatgacgatgaaggagggtgttgat 443  Q
    ||||||| ||| ||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  37610489 atggttatggtagagtgattgattttgggtttgagttgatgaggatgaaggagggtgttgat 37610550  T

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Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 30 - 208
Target Start/End: Complemental strand, 2039062 - 2038873
Alignment:
Q  30 ctttttctaccctttcatactctactagttgtgatatgaggacaccatctccccattagtattattat----------aaatactaattacagattaaac 119  Q
    |||| |||||||||||||| | |||||| ||||||||||  ||| ||||||| |||||||||||||||          |||| ||||||||||||| |||    
T  2039062 ctttctctaccctttcatattatactagctgtgatatgaatacaacatctcctcattagtattattatggagaaggttaaattctaattacagattgaac 2038963  T
Q  120 tatttatttgagtgggaatataatttcataac-gtcgctactatagatgattttatgggtgtttcaaatttaggcataacatggaggatg 208  Q
    ||||||||| ||||||||||||||||||||||  |   | |||   || ||||||||||| |||||||||||||||||||||||||||||    
T  2038962 tatttatttaagtgggaatataatttcataactctacttcctacgcataattttatgggtttttcaaatttaggcataacatggaggatg 2038873  T

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Target: chr5 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 38 - 208
Target Start/End: Original strand, 25074627 - 25074808
Alignment:
Q  38 accctttcatactctactagttgtgatatgaggacaccatctccccattagtattattat----------aaatactaattacagattaaactatttatt 127  Q
    ||||||||||| | |||||| ||||||||||  ||| ||||||| |||||||||||||||          ||||  |||||||||||| |||||||||||    
T  25074627 accctttcatattatactagctgtgatatgaatacaacatctcctcattagtattattatggagaaggttaaattataattacagattgaactatttatt 25074726  T
Q  128 tgagtgggaatataatttcataacgtcgcta-ctatagatgattttatgggtgtttcaaatttaggcataacatggaggatg 208  Q
    | ||||||||||||||||||||||    ||| |||   || ||||||||||| |||||||||||||||||||||||||||||    
T  25074727 taagtgggaatataatttcataactctactacctacgcataattttatgggtttttcaaatttaggcataacatggaggatg 25074808  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 38 - 208
Target Start/End: Original strand, 25132596 - 25132777
Alignment:
Q  38 accctttcatactctactagttgtgatatgaggacaccatctccccattagtattattat----------aaatactaattacagattaaactatttatt 127  Q
    ||||||||||| | |||||| ||||||||||  ||| ||||||| |||||||||||||||          ||||  |||||||||||| |||||||||||    
T  25132596 accctttcatattatactagctgtgatatgaatacaacatctcctcattagtattattatggagaaggttaaattataattacagattgaactatttatt 25132695  T
Q  128 tgagtgggaatataatttcataacgtcgcta-ctatagatgattttatgggtgtttcaaatttaggcataacatggaggatg 208  Q
    | ||||||||||||||||||||||    ||| |||   || ||||||||||| |||||||||||||||||||||||||||||    
T  25132696 taagtgggaatataatttcataactctactacctacgcataattttatgggtttttcaaatttaggcataacatggaggatg 25132777  T

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Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 382 - 443
Target Start/End: Complemental strand, 37236189 - 37236128
Alignment:
Q  382 atggttaaggtggagagattgattttgggtttgagttgatgacgatgaaggagggtgttgat 443  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37236189 atggttaaggtggagagattgattttggatttgagttgatgacgatgaaggagggtgttgat 37236128  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 382 - 443
Target Start/End: Original strand, 13598986 - 13599047
Alignment:
Q  382 atggttaaggtggagagattgattttgggtttgagttgatgacgatgaaggagggtgttgat 443  Q
    ||||||| ||||||| |||| |||| |||||||||||||||| |||||| ||||||||||||    
T  13598986 atggttatggtggagtgattaatttcgggtttgagttgatgaggatgaaagagggtgttgat 13599047  T

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Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 382 - 443
Target Start/End: Complemental strand, 17244580 - 17244519
Alignment:
Q  382 atggttaaggtggagagattgattttgggtttgagttgatgacgatgaaggagggtgttgat 443  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17244580 atggttaaggtggagagattgattttgggtttgagttgatgtcgatgaaggagggtgttgat 17244519  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 205 - 262
Target Start/End: Complemental strand, 9484509 - 9484451
Alignment:
Q  205 gatgggtcacttgattttttaat-aagaagaataagatcaatttttacggcttatagaa 262  Q
    |||||||| |||||||||||||| |||||| ||||||||||||||||| ||||||||||    
T  9484509 gatgggtctcttgattttttaatcaagaagtataagatcaatttttacagcttatagaa 9484451  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 52721113 - 52721166
Alignment:
Q  206 atgggtcacttgattttttaat-aagaagaataagatcaatttttacggcttat 258  Q
    ||||||| |||||||||||||| |||||| ||||||||||||||||| ||||||    
T  52721113 atgggtctcttgattttttaatcaagaagtataagatcaatttttacagcttat 52721166  T

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