View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_44 (Length: 439)
Name: NF1408_low_44
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 88 - 347
Target Start/End: Original strand, 28902838 - 28903097
Alignment:
| Q |
88 |
cattgtgtttgtaacctcaaggagccaactctcacatatcacaaatatgttactttgattcaagacattaaagatcttttttacgttcattggatcattt |
187 |
Q |
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| T |
28902838 |
cattgtgtttgtaacctcaaggagccaactctcacatatcacaaatatgttaccttgattcaagatattaaagatcttttttacgttcattggatcattt |
28902937 |
T |
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| Q |
188 |
ctattgctcatatccttcgtaagaaaatatttgcatcgacttcttgacaaagtttggtgcttcctctacctcggatttcataattctcacatctcctccg |
287 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28902938 |
ctactgctcatatccttcgtaagaaaatatttgcatcgacttcttgacaaagtttggtgcttcctctacctcggatttcataattctcacatctcctccg |
28903037 |
T |
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| Q |
288 |
tcagacttaccagacctcctcttaaccgacactgtgggaacttgattatgtggattgtag |
347 |
Q |
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| T |
28903038 |
tcaaacttaccaaacctcctcttagccgactctgtgggaacttgattatgtggattgtag |
28903097 |
T |
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