View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_52 (Length: 418)
Name: NF1408_low_52
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 33 - 406
Target Start/End: Original strand, 22956073 - 22956446
Alignment:
| Q |
33 |
tggtaatattctaggggcacatgacgttcataattgtttatgtgaatagcctgattgatacttcatgtaagaattggaaccatgatttggttcagtaggt |
132 |
Q |
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| T |
22956073 |
tggtaatattctaggggcacatgacgttcataattgtttatgtgaatagcctgattgatacttcatgtaagaattggaaccatgatttggttcagtaggt |
22956172 |
T |
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| Q |
133 |
tttaagcggcaacaaagattgtgctatttttggtaatggtgtgcaattccctacacgttgtgttagttgaatctctccctgtttttgagtatttggaagc |
232 |
Q |
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| T |
22956173 |
tttaagcggcaacaaagattgtgctattttcggtaatggtgtgcaattccctacaagttgtgttagctgaatctctccctgtttttgagtatttggaagc |
22956272 |
T |
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| Q |
233 |
acatgaaccttaaatcatggcaagatgttaatgagctatgcacacaagtggtagagcgagttcataatttaatagagaaatgtccataagatagttgctc |
332 |
Q |
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| T |
22956273 |
acatgaaccttaaatcatggcaagatgttaatgagctatgcacacaagtggtagagcgagttcatcatttaatagagaaatgtccttaagatagttgctc |
22956372 |
T |
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| Q |
333 |
gttgtcatcattctcacgttgataatgtcgacttcatacttgattcaaaaacaatttcgaatcctttccatatt |
406 |
Q |
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| T |
22956373 |
gttgtcatcattctcatgttgataatgtcgacttcatgcttgattcaaaaacaatttcgaatcctttccatatt |
22956446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 285
Target Start/End: Complemental strand, 6979859 - 6979788
Alignment:
| Q |
214 |
tttttgagtatttggaagcacatgaaccttaaatcatggcaagatgttaatgagctatgcacacaagtggta |
285 |
Q |
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| T |
6979859 |
ttttggagtatttggaagaacatgaatcttaaattatgggaagatgttagtgagctatgcgcacaagtggta |
6979788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 288
Target Start/End: Original strand, 33168875 - 33168922
Alignment:
| Q |
241 |
cttaaatcatggcaagatgttaatgagctatgcacacaagtggtagag |
288 |
Q |
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|||||| ||||||| |||||||||||||||||| | |||||||||||| |
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| T |
33168875 |
cttaaaccatggcacgatgttaatgagctatgcgcgcaagtggtagag |
33168922 |
T |
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