View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1408_low_54 (Length: 414)
Name: NF1408_low_54
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_54 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 80 - 414
Target Start/End: Complemental strand, 32098884 - 32098550
Alignment:
| Q |
80 |
aggtgttttagcggtagattatataccatgcttggataatcttaaggctattaaggctttgaaaagaaggaggcacatggagcatagggaaagacattgt |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32098884 |
aggtgttttagcggtagattatataccatgcttggataatcttaaggctattaaggctttgaaaagaaggaggcacatggagcatagggaaagacattgt |
32098785 |
T |
|
| Q |
180 |
cctaaatctactcctcattgtttgttgcctcttcccaaagggtataaagttccagtttcatggcctaagagcagggacatggtgagattgatactttggt |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32098784 |
cctaaatctactcctcattgtttgttgcctcttcccaaagggtataaagttccggtttcatggcctaagagcagggacatggtgagattgatactttggt |
32098685 |
T |
|
| Q |
280 |
aagaaactttcgggtttctatgttttgttattccatcatgtttgcacgagtttggtctttagaaatgataaacatgtttgatacgttgatcacttaattg |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32098684 |
aagaaactttcgggtttctatgttttgttattccatcatgtttgcaagagtttggtctttagaaatgataaacatggttgatacgttgatcacttaattg |
32098585 |
T |
|
| Q |
380 |
caagggtatgttgatgttaagactgtttaagtctc |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
32098584 |
taagggtatgttgatgttaagactgtttaagtctc |
32098550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 91 - 283
Target Start/End: Original strand, 35878863 - 35879055
Alignment:
| Q |
91 |
cggtagattatataccatgcttggataatcttaaggctattaaggctttgaaaagaaggaggcacatggagcatagggaaagacattgtcctaaatctac |
190 |
Q |
| |
|
|||| |||||||||||||| ||||||||| ||| |||||| | ||||||||| ||||||||| ||||| ||||| ||||||||||||||| | ||| |
|
|
| T |
35878863 |
cggttgattatataccatgtttggataattataaagctattcaagctttgaaatcaaggaggcatatggaacatagagaaagacattgtcctgatactag |
35878962 |
T |
|
| Q |
191 |
tcctcattgtttgttgcctcttcccaaagggtataaagttccagtttcatggcctaagagcagggacatggtgagattgatactttggtaaga |
283 |
Q |
| |
|
| | ||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
35878963 |
tttgaactgtttgttgcctcttcctaaagggtataaagttccagttcattggcctaagagtagggacatggtgagattgattctttggtaaga |
35879055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University