View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_57 (Length: 401)
Name: NF1408_low_57
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_57 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 30 - 388
Target Start/End: Complemental strand, 52726741 - 52726384
Alignment:
| Q |
30 |
gttatgggtttctttttatactaaaaggttgtggtttttgaaattt-ggaatcccatttcacttcatggattgaaataatattttttggtggaaagattg |
128 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
52726741 |
gttatgggtttctttttatactaa--ggttgtggtttttgaaattttggaatcacatttcacttcatggattgaaagaatattttttggtggaaaggttg |
52726644 |
T |
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| Q |
129 |
atagaatttatgattagatattggtataattatcatgctttggctctgctgtaaataagcttcatgccttttcttgacagtaacttcatgcctttgtctt |
228 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52726643 |
atagaatctatgattagatattggtataattatcatgctttggctctgctgtaaataagcttcatgccttttcttgacagtaacttcatgcctttgtctt |
52726544 |
T |
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| Q |
229 |
gttgaaaattatggaatagtatatctatgtggccctgctgttttgtggcctaaaatccgtcaccaccaaatggtgacataggaaaaacttggagtctttt |
328 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52726543 |
gttgaaaattatggcatagtatatctatgtggccctgctgttttgtggcctaaaatccgtcaccaccaaatggtgacataggaaaaacttggagtctttt |
52726444 |
T |
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| Q |
329 |
gcttttttagatagaatgtataaataatcactgatattggcaccccatccccctatagaa |
388 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
52726443 |
gcttttttagatagaatgtataaataatcactgataatggcaccccatccccctatagaa |
52726384 |
T |
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