View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1408_low_63 (Length: 392)
Name: NF1408_low_63
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_63 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 52 - 308
Target Start/End: Original strand, 3179119 - 3179375
Alignment:
| Q |
52 |
aacctcggcgggattcctatattggatcaaagactttcacctgctgatgtttttgctactggtgcaggacatgttaatcctgttaaagctaatgatcctg |
151 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3179119 |
aacctcggcgggattcctatattggatcaaagactttcacctgctgatgtttttgctactggtgcaggacatgttaatcctgttaaagctaatgatcctg |
3179218 |
T |
|
| Q |
152 |
gtcttgtttatgatattgaaccagaagattacgttccttatctgtgtggtttgggttatactgatcaagagattgaacttattgctcagtgggtagtgaa |
251 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3179219 |
gtcttgtttatgatattcaaccagaagattacgttccttatctgtgtggtttgggttatactgatcaagagattgaacttattgctcagtgggtagtgaa |
3179318 |
T |
|
| Q |
252 |
ctgctctaatgtgaaaagtatacccgaagctcaactgaattatccttccttttctat |
308 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
3179319 |
ctgctctaatgtgaaaagtataccagaagctcaactgaattatccttctttttctat |
3179375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 52 - 308
Target Start/End: Complemental strand, 3239721 - 3239465
Alignment:
| Q |
52 |
aacctcggcgggattcctatattggatcaaagactttcacctgctgatgtttttgctactggtgcaggacatgttaatcctgttaaagctaatgatcctg |
151 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3239721 |
aacctcggcgggattcctatattggatcaaagactttcacctgctgatgtttttgctactggtgcaggacatgttaatcctgttaaagctaatgatcctg |
3239622 |
T |
|
| Q |
152 |
gtcttgtttatgatattgaaccagaagattacgttccttatctgtgtggtttgggttatactgatcaagagattgaacttattgctcagtgggtagtgaa |
251 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3239621 |
gtcttgtttatgatattcaaccagaagattacgttccttatctgtgtggtttgggttatactgatcaagagattgaacttattgctcagtgggtagtgaa |
3239522 |
T |
|
| Q |
252 |
ctgctctaatgtgaaaagtatacccgaagctcaactgaattatccttccttttctat |
308 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||| |
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| T |
3239521 |
ctgctctaatgtgaaaagtataccagaagctcaactgagttatccttctttttctat |
3239465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 52 - 308
Target Start/End: Complemental strand, 3220689 - 3220433
Alignment:
| Q |
52 |
aacctcggcgggattcctatattggatcaaagactttcacctgctgatgtttttgctactggtgcaggacatgttaatcctgttaaagctaatgatcctg |
151 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| |||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3220689 |
aacctcggcgggatacctatactggatcaaaggcttttgccggctgatatttttgctactggtgcaggacatgttaatcctgttaaagctaatgatcctg |
3220590 |
T |
|
| Q |
152 |
gtcttgtttatgatattgaaccagaagattacgttccttatctgtgtggtttgggttatactgatcaagagattgaacttattgctcagtgggtagtgaa |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||| |||||| ||| || |||||| |
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| T |
3220589 |
gtcttgtttatgatattgaaccagaagattatgttccttatctgtgtggtttgggttattctgataaagagattgaagttattgttcaacggaaagtgaa |
3220490 |
T |
|
| Q |
252 |
ctgctctaatgtgaaaagtatacccgaagctcaactgaattatccttccttttctat |
308 |
Q |
| |
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|| |||||||||||||||||||| ||||||||| ||||||||||||| |||||||| |
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| T |
3220489 |
gtgttctaatgtgaaaagtataccagaagctcaattgaattatccttctttttctat |
3220433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 52 - 308
Target Start/End: Complemental strand, 3230922 - 3230666
Alignment:
| Q |
52 |
aacctcggcgggattcctatattggatcaaagactttcacctgctgatgtttttgctactggtgcaggacatgttaatcctgttaaagctaatgatcctg |
151 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| |||| || |||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3230922 |
aacctcggcgggatacctatactggatcaaaggcttttgccggctgatattttcgctactggtgcaggacatgttaatccttttaaagctaatgatcctg |
3230823 |
T |
|
| Q |
152 |
gtcttgtttatgatattgaaccagaagattacgttccttatctgtgtggtttgggttatactgatcaagagattgaacttattgctcagtgggtagtgaa |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||| ||||||||||| |||||| ||||||| |||||| |
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| T |
3230822 |
gtcttgtttatgatattgaaccagaagattatgttccttatctttgtggtttgggttattctgataaagagattgaagttattgttcagtggaaagtgaa |
3230723 |
T |
|
| Q |
252 |
ctgctctaatgtgaaaagtatacccgaagctcaactgaattatccttccttttctat |
308 |
Q |
| |
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||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| |
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| T |
3230722 |
gtgctctaatgtgaaaagtataccagaagctcaattgaattatccttctttttctat |
3230666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 52 - 308
Target Start/End: Complemental strand, 3225674 - 3225418
Alignment:
| Q |
52 |
aacctcggcgggattcctatattggatcaaagactttcacctgctgatgtttttgctactggtgcaggacatgttaatcctgttaaagctaatgatcctg |
151 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| |||| || |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3225674 |
aacctcggcgggatccctatactggatcaaaggctttttccggctgatattttcgctactggtgcaggacatgttaatcctgttaaagctaatgatcctg |
3225575 |
T |
|
| Q |
152 |
gtcttgtttatgatattgaaccagaagattacgttccttatctgtgtggtttgggttatactgatcaagagattgaacttattgctcagtgggtagtgaa |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||| ||||||||||| |||||| ||||||| |||||| |
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| T |
3225574 |
gtcttgtttatgatattgaaccagaagattatgttccttatctatgtggtttgggttattctgataaagagattgaagttattgttcagtggaaagtgaa |
3225475 |
T |
|
| Q |
252 |
ctgctctaatgtgaaaagtatacccgaagctcaactgaattatccttccttttctat |
308 |
Q |
| |
|
||||||||||||||||||||||| ||||| || ||||| |||||||| || ||||| |
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| T |
3225474 |
gtgctctaatgtgaaaagtataccagaagcacagctgaactatccttctttctctat |
3225418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 3201844 - 3201695
Alignment:
| Q |
67 |
cctatattggatcaaagactttcacctgctgatgtttttgctactggtgcaggacatgttaatcctgttaaagctaatgatcctggtcttgtttatgata |
166 |
Q |
| |
|
||||| ||||| ||||| ||| ||| |||||||| ||||| |||||||| ||||||||||| ||| ||||| || ||||| || ||||||||||||| |
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|
| T |
3201844 |
cctattttggaccaaaggcttctaccagctgatgtatttgccactggtgctggacatgttaacccttcaaaagcaaacgatccgggacttgtttatgata |
3201745 |
T |
|
| Q |
167 |
ttgaaccagaagattacgttccttatctgtgtggtttgggttatactgat |
216 |
Q |
| |
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||||| || | ||||| ||||||||| ||||||||||| |||||||||| |
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| T |
3201744 |
ttgaaacaaatgattatgttccttatttgtgtggtttgaattatactgat |
3201695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 3207818 - 3207669
Alignment:
| Q |
67 |
cctatattggatcaaagactttcacctgctgatgtttttgctactggtgcaggacatgttaatcctgttaaagctaatgatcctggtcttgtttatgata |
166 |
Q |
| |
|
||||| ||||| |||||| || ||| |||||||| ||||| |||||||| |||||||| || ||| ||||| |||||||| || ||||||||||||| |
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| T |
3207818 |
cctattttggaccaaagaattctaccagctgatgtatttgccactggtgctggacatgtcaacccttcaaaagcaaatgatccgggacttgtttatgata |
3207719 |
T |
|
| Q |
167 |
ttgaaccagaagattacgttccttatctgtgtggtttgggttatactgat |
216 |
Q |
| |
|
||||| || | ||||| ||||||||| ||||||||||| |||||||||| |
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| T |
3207718 |
ttgaaacaaatgattatgttccttatttgtgtggtttgaattatactgat |
3207669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 68 - 204
Target Start/End: Complemental strand, 3215753 - 3215617
Alignment:
| Q |
68 |
ctatattggatcaaagactttcacctgctgatgtttttgctactggtgcaggacatgttaatcctgttaaagctaatgatcctggtcttgtttatgatat |
167 |
Q |
| |
|
|||| ||||| ||||||||| ||| |||||| | ||||| |||||||| |||||||| || ||| ||||| || ||||| || |||||||||||||| |
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| T |
3215753 |
ctattttggaccaaagacttaaaccagctgatttatttgccactggtgctggacatgtcaacccttcgaaagcaaacgatccaggacttgtttatgatat |
3215654 |
T |
|
| Q |
168 |
tgaaccagaagattacgttccttatctgtgtggtttg |
204 |
Q |
| |
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||||||| | ||||| |||||||| ||||||||||| |
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|
| T |
3215653 |
tgaaccaaatgattatgttccttacttgtgtggtttg |
3215617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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