View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_67 (Length: 385)
Name: NF1408_low_67
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_67 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 21 - 385
Target Start/End: Original strand, 37035721 - 37036085
Alignment:
| Q |
21 |
acatcatcaatagtactagaagtatgcaggaaagagagaaggcagaattgggcaaatatcagcttttccggtctcagatgcggcaacacccattactagt |
120 |
Q |
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| T |
37035721 |
acataatcaatagtactagaagtatgcaggaaagagagaaggcagaattggacaaatagcagcttttccggtctcagatgcggcaacacccattactagt |
37035820 |
T |
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| Q |
121 |
gttagcatgttatcactttccctcttttctcgcatgaggcaagcaaggcctgaaagagtgaatcgtcgaacagaaggaaggacttcgtactagggctgga |
220 |
Q |
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| T |
37035821 |
gttagcatgttatcactttctctcttttctcgcacgaggcaagcaaggcctgaaagagtgaatcgtcgaacaggaggaatgacttcgtaccaaggctgga |
37035920 |
T |
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| Q |
221 |
atcaaagttgaaatttgtttctctttcaaagctagaagcacagttctggaagcaaagccaagttttatctctggttcacaagcttgacgttctcaaggcg |
320 |
Q |
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| T |
37035921 |
atcaaagtggaaattcgtttctctttcaaagctagaagcacacttctggaagcaaagccaagttctatctctggttcacaagcctgacgttctcaaggcg |
37036020 |
T |
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| Q |
321 |
cggaacgctttggttcgcaagttaggttatctttctcttgacgctttcatgctttcaccttcgga |
385 |
Q |
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| T |
37036021 |
tggaaggctttggttcgtaagtcaggttatctttctcctgacgctttcatgctttcaccttcgga |
37036085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 21309554 - 21309502
Alignment:
| Q |
19 |
ggacatcatcaatagtactagaagtatgcaggaaagagagaaggcagaattgg |
71 |
Q |
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| T |
21309554 |
ggacatgatcaatagtactagaagtatacaggaaagagagaaggcagaattgg |
21309502 |
T |
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