View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_68 (Length: 380)
Name: NF1408_low_68
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_68 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 31607342 - 31607066
Alignment:
| Q |
1 |
accaatcctggtcacatacataggtaaaaataatgtcattacttgtggacatgtaagcttagaaagaagttttcagaattatatctcgcaactattgaat |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31607342 |
accaatccttgtcacatacataggtaaaaataatgtcattacttgtggacatgtaagcttagaaagaagttttcagaattatatctcgcaactactgaat |
31607243 |
T |
|
| Q |
101 |
gtgtcgttttgtgtgagctttacctgcacccggagtaatgcaaacgagaccagtcatcattccttggacagaacctatcaatgagcccttcttgtataca |
200 |
Q |
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||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31607242 |
gtgtcgttttgtgtgagctttacctgcacccggtgtgatgcaaacgagaccagtcatcattccttggacagaacctatcaatgagcctttcttgtataca |
31607143 |
T |
|
| Q |
201 |
gccatatctagagaaatccaaacaagtatgcttgtagcagtgcacatatgagtattgaatattgccaaggatgtaat |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
31607142 |
gccatatctagagaaatccaaacaagtatgcttgtagcagtgcacaaatgagtattgaatatagccaaggatgtaat |
31607066 |
T |
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