View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_71 (Length: 369)
Name: NF1408_low_71
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_71 |
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| [»] scaffold0018 (1 HSPs) |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 30 - 362
Target Start/End: Original strand, 31052963 - 31053295
Alignment:
| Q |
30 |
gttagcaattagaatgtatgctagtttctctgcaaccctttcagttctattatatggatccagtttcatccttctctgccaccattttgttcttatgaat |
129 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31052963 |
gttagcaattagagtgtatgctagtttctctgcaaccctttcagttctattatatggatccagtttcatccttctctgccaccattttgttcttatgaat |
31053062 |
T |
|
| Q |
130 |
gaattttggtcataatatcttacatattgatcagcaatcatgaaaccatgacatcgtaaagttagaatatcaatgagacttgcatcagaaggctagaatc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31053063 |
gaattttggtcataatatcttacatattgatcagcaatcatgaaaccatgacatcgtaaagttagaatatcaatgagacttgcatcagaaggctagaatc |
31053162 |
T |
|
| Q |
230 |
atgacagttacataaaagaggagataaatagaaagaaaatatatatctcttttcttaatgttagctactaaactacattgaaattattgtgatgcaagca |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31053163 |
atgacagttacataaaagaggagataaatagaaagaaaatatatatctcttttcttaatgttagctactaaactacattgaaattattgtgatgcaagca |
31053262 |
T |
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| Q |
330 |
atggtacctcttatatttgagttgatgtctgtg |
362 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
31053263 |
atggtacctcttatatttgagttgatgtctgtg |
31053295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 30 - 362
Target Start/End: Complemental strand, 170286 - 169954
Alignment:
| Q |
30 |
gttagcaattagaatgtatgctagtttctctgcaaccctttcagttctattatatggatccagtttcatccttctctgccaccattttgttcttatgaat |
129 |
Q |
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| T |
170286 |
gttagcaattagagtgtatgctagtttctctgcaaccctttcagttctattatatggatccagtttcatccttctctgccaccattttgttcttatgaat |
170187 |
T |
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| Q |
130 |
gaattttggtcataatatcttacatattgatcagcaatcatgaaaccatgacatcgtaaagttagaatatcaatgagacttgcatcagaaggctagaatc |
229 |
Q |
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||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
170186 |
gaactttggtcataatatcttacatattcatcagcaatcatgaaaccatgacatcgtaaagttagaatatcaatgaaacttgcatcagaaggctagaatc |
170087 |
T |
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| Q |
230 |
atgacagttacataaaagaggagataaatagaaagaaaatatatatctcttttcttaatgttagctactaaactacattgaaattattgtgatgcaagca |
329 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
170086 |
atgacagttacataaaagatgagataaatagaaagaaaatatatatctcttttcttaatgttagctactaaactacattgaaattattgtgatgcaagca |
169987 |
T |
|
| Q |
330 |
atggtacctcttatatttgagttgatgtctgtg |
362 |
Q |
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| T |
169986 |
atggtacctcttatatttgagttgatgtctgtg |
169954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 93 - 279
Target Start/End: Original strand, 5380121 - 5380313
Alignment:
| Q |
93 |
tttcatccttctctgccaccattttgttcttatgaatgaattttggtcataatatct--tacata-----ttga-tcagcaatcatgaaaccatgacatc |
184 |
Q |
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|||||||||||||||| | ||| ||||||||||||||||| |||||||||| ||| | ||||| |||| ||| |||||||||||||| ||| | |
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| T |
5380121 |
tttcatccttctctgctaacatcttgttcttatgaatgaactttggtcatattatgtcatacatggatttttgaatcacgaatcatgaaaccataacaac |
5380220 |
T |
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| Q |
185 |
gtaaagttagaatatcaatgagacttgcatcagaaggctagaatc-atgacagttacataaaagaggagataaatagaaagaaaatatatatctct |
279 |
Q |
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| T |
5380221 |
ataaagttagaatatcaatcaaacttgcaccagaaggctagaatcaatgacagttac---acagaggagataaatagcaagaaaatatatacctct |
5380313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 93 - 222
Target Start/End: Complemental strand, 5345344 - 5345212
Alignment:
| Q |
93 |
tttcatccttctctgccaccattttgttcttatgaatgaattttggtcataatatcttacatattgatcagca---atcatgaaaccatgacatcgtaaa |
189 |
Q |
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|||||||||||||||| ||||||| |||||||||||||| ||||||||| ||| ||||||||| | | || ||||||||||||||||| | | || |
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| T |
5345344 |
tttcatccttctctgctaccatttatttcttatgaatgaactttggtcatgttatgttacatatttttaatcacggatcatgaaaccatgacaacattaa |
5345245 |
T |
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| Q |
190 |
gttagaatatcaatgagacttgcatcagaaggc |
222 |
Q |
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| T |
5345244 |
gttagaatatcaatcaaacttgcatcagaaggc |
5345212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 222
Target Start/End: Original strand, 5364166 - 5364313
Alignment:
| Q |
80 |
tatatggatccagtttcatccttctctgccaccattttgttcttatgaatgaattttggtcataatatcttacatattg---atcagcaatcatgaaacc |
176 |
Q |
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|||||| || || |||||||||| ||||| || ||||||||||||| |||||| |||| | ||| ||| ||||||||| |||| |||||||||||| |
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| T |
5364166 |
tatatgaattcaatttcatccttttctgctacaattttgttcttataaatgaactttgtt-atattatgttacatatttttaatcacgaatcatgaaacc |
5364264 |
T |
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| Q |
177 |
a---tgacatcgtaaagttagaatatcaatgagacttgcatcagaaggc |
222 |
Q |
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| T |
5364265 |
accatgacaacataaagttagaatatcaatcaaacttgcatcagaaggc |
5364313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 5364062 - 5364108
Alignment:
| Q |
37 |
attagaatgtatgctagtttctctgcaaccctttcagttctattata |
83 |
Q |
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| T |
5364062 |
attagaatgtatgaaagtttctctgctaccatttcagttctattata |
5364108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 343
Target Start/End: Original strand, 6428 - 6481
Alignment:
| Q |
290 |
ttagctactaaactacattgaaattattgtgatgcaagcaatggtacctcttat |
343 |
Q |
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||||||||||| ||||| |||||| ||| ||||||||||| |||||| |||||| |
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| T |
6428 |
ttagctactaacctacaatgaaatgattctgatgcaagcattggtacttcttat |
6481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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