View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_74 (Length: 367)
Name: NF1408_low_74
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_74 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 99 - 285
Target Start/End: Original strand, 40945248 - 40945434
Alignment:
| Q |
99 |
aaacagtatcatcatctcccatcacaaaccatcttacatctttcaatccaagcttcaatgtctctgtcacaacccttgatatcctcaatgctgacctttg |
198 |
Q |
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| T |
40945248 |
aaacagtatcatcatctcccatcacaaaccatcttacatctttcaatccaagcttcaatgtctctgtcacaacccttgatatcctcaatgctgacctttg |
40945347 |
T |
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| Q |
199 |
tccttgtcgatttgtataccgaaatttagaagtgtcacctgagattcgaatatcaggtaacccttcgttcctttctgtactcactct |
285 |
Q |
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| T |
40945348 |
tccctgtcgatttgtataccgaaatttagaagtgtcatctgagattcgaatatcaggtaacccttcgttcctttgtgtactcactct |
40945434 |
T |
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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 101 - 258
Target Start/End: Original strand, 22776636 - 22776793
Alignment:
| Q |
101 |
acagtatcatcatctcccatcacaaaccatcttacatctttcaatccaagcttcaatgtctctgtcacaacccttgatatcctcaatgctgacctttgtc |
200 |
Q |
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|||||||||||||||||||||| |||||||| ||||| | ||| ||||| ||||||||||||||||||| |||||| ||||| || || || || |||| |
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| T |
22776636 |
acagtatcatcatctcccatcatgaaccatctcacatcctccaacccaagtttcaatgtctctgtcacaatccttgaaatccttaaagcagatctctgtc |
22776735 |
T |
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| Q |
201 |
cttgtcgatttgtataccgaaatttagaagtgtcacctgagattcgaatatcaggtaa |
258 |
Q |
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| T |
22776736 |
cctgacgattcgtatacttaaatctactagtgtcccccgaaatttgaatatctggtaa |
22776793 |
T |
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