View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_78 (Length: 361)
Name: NF1408_low_78
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_78 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 8e-80; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 96 - 349
Target Start/End: Complemental strand, 41928699 - 41928438
Alignment:
| Q |
96 |
gcttttttcatcaatctatgcacattcgcaatgggaaaggctcttgaaaattcttcttgcaccctcgaatcagctggttgcactccatcctctaacatca |
195 |
Q |
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| T |
41928699 |
gcttttttcatcaatctatgcacattcgcaatgggaaaggctcttgaaaattcttcttgcaccctcgaactagctggttgcactccatcctctaacatca |
41928600 |
T |
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| Q |
196 |
ccacaatattag------ttatatataattggcgtgaagcagcagt--tataannnnnnncaaaatccagacataaatgcttgatagcgataaataatag |
287 |
Q |
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| T |
41928599 |
ccacaatagtagttattattatatataattggcgtgaagcagcagttatataatttttttcaaaatccaaacataaatgcttgctagctataaataatag |
41928500 |
T |
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| Q |
288 |
cactctaagatttactaatatgtttcatttcatgatatacattaaacagtttgagtatagta |
349 |
Q |
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| T |
41928499 |
cactatttgttttactaatatgtttcttttcatgaacttcattaaacagtttgagtatagta |
41928438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 96 - 237
Target Start/End: Complemental strand, 41910760 - 41910619
Alignment:
| Q |
96 |
gcttttttcatcaatctatgcacattcgcaatgggaaaggctcttgaaaattcttcttgcaccctcgaatcagctggttgcactccatcctctaacatca |
195 |
Q |
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| T |
41910760 |
gcttttttcatcaatctatgcacattggcaatgggaaaggctcttgaaaattcttcatgcaccctcgaactagctggttgcactccatcctctaacatca |
41910661 |
T |
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| Q |
196 |
ccacaatattagttatatataattggcgtgaagcagcagtta |
237 |
Q |
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| T |
41910660 |
ccacaatagtagttatttataattggcgtgaagtagtagtta |
41910619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 41928770 - 41928856
Alignment:
| Q |
1 |
agctttgttaccgctgaggctaaccattattgcaagttagattgtagaacaacaattactgctgaagatttgttagctactatgcaa |
87 |
Q |
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| T |
41928770 |
agctttgttaccgctgaggctaaccattattgcaagttagattgtagaacaacaattactgctgaagatttgttagctactatgcaa |
41928856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 41938037 - 41938086
Alignment:
| Q |
38 |
tagattgtagaacaacaattactgctgaagatttgttagctactatgcaa |
87 |
Q |
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| T |
41938037 |
tagattgtagaacaacaattactgctgaagatttgttagctactatgcaa |
41938086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 41911051 - 41911104
Alignment:
| Q |
22 |
aaccattattgcaagttagattgtagaacaacaattactgctgaagatttgtta |
75 |
Q |
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| T |
41911051 |
aaccattattgcaatttagattataggacaacaattactgctgaagatttgtta |
41911104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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