View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_83 (Length: 355)
Name: NF1408_low_83
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_83 |
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Alignment Details
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 81 - 180
Target Start/End: Complemental strand, 18985500 - 18985402
Alignment:
| Q |
81 |
cctactatctctgcactcaagttatgctctagaataacaggattcccatttggtcttccttagctgtgtgtgttgatcaacccgtaaaggcgatagaaac |
180 |
Q |
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| T |
18985500 |
cctactatctcttcactcaagttatgctctagaataacaggattcccatttggtcttccttagctgtgtgtgttgatcaacccgtaaagg-gatagaaac |
18985402 |
T |
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Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 259 - 347
Target Start/End: Complemental strand, 18985323 - 18985235
Alignment:
| Q |
259 |
agtcaaataattgaattttctatacttatatattaagggaatattaacttttggtatacccctattttatttacaatcctgtcctttgc |
347 |
Q |
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| T |
18985323 |
agtcaaataattgaattttctatacttatatattaagggagtattaacttttggtataaccctattttatttacaatcctgtcctttgc |
18985235 |
T |
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