View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1408_low_87 (Length: 352)
Name: NF1408_low_87
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_87 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 59 - 346
Target Start/End: Original strand, 8251943 - 8252230
Alignment:
| Q |
59 |
tgaaaagaataaccaacatttgcatcgccccagatagaattacacattatatcataaaaaataccacactttgtttcctgaatacaaagaataagcggac |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8251943 |
tgaaaagaataaccaacatttgcatcgccccagatagaattacacattatatcataaaaaataccacactttgtttccttaatacaaagaataagcggac |
8252042 |
T |
|
| Q |
159 |
acttttccctcaccaattgtctcacctccctcctcttctcatgtccccccaaaccccgtacattccaagaaatgagcttcattttacccaccaataccca |
258 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8252043 |
acttctccctcaccaactgtctcacctccctcctcttctcatgtccccccaaaccccgtacattccaagaaatgagcttcattttacccaccaacaccca |
8252142 |
T |
|
| Q |
259 |
caaagaccaccaccccgacctccctccacaccctcacttcctcaactcacttcccttgcctatcaccctctttaggttttcgtctcac |
346 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| | |||| ||||| |||||| |
|
|
| T |
8252143 |
caaagaccaccaccccgacctccctccacgccctcacttcctcaactcacttcccttgcccatcaccttatttattttttcttctcac |
8252230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 31121360 - 31121326
Alignment:
| Q |
164 |
tccctcaccaattgtctcacctccctcctcttctc |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
31121360 |
tccctcaccaattgtctcacctccctcctcttctc |
31121326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 59 - 242
Target Start/End: Original strand, 44894111 - 44894294
Alignment:
| Q |
59 |
tgaaaagaataaccaacatttgcatcgccccagatagaattacacattatatcataaaaaataccacactttgtttcctgaatacaaagaataagcggac |
158 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||| ||||| | ||||||| ||| ||| |||||||||||||||||||||| ||||||| |||| |
|
|
| T |
44894111 |
tgaaaagaataaccaacatttgcatcgctccaaatagatttacataacatatcatcaaacataacacactttgtttcctgaatacatagaataaaaggac |
44894210 |
T |
|
| Q |
159 |
acttttccctcaccaattgtctcacctccctcctcttctcatgtccccccaaaccccgtacattccaagaaatgagcttcattt |
242 |
Q |
| |
|
|| ||| ||||||| |||||||||||||||||||||||| || ||||||||||| || ||||| |||||||||||||||| |
|
|
| T |
44894211 |
ttttctccgtcaccaactgtctcacctccctcctcttctcaaaacctcccaaaccccgaacgttccatgaaatgagcttcattt |
44894294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 59 - 241
Target Start/End: Original strand, 19156755 - 19156937
Alignment:
| Q |
59 |
tgaaaagaataaccaacatttgcatcgccccagatagaattacacattatatcataaaaaataccacactttgtttcctgaatacaaagaataagcggac |
158 |
Q |
| |
|
||||||||||||| |||||||| |||||||| || | | |||||| ||||||| |||| || |||| || | |||||||||||||||||||| |||| |
|
|
| T |
19156755 |
tgaaaagaataacaaacatttgggtcgccccaaatggtttgacacatcatatcatcaaaattaacacatttggattcctgaatacaaagaataaaaggac |
19156854 |
T |
|
| Q |
159 |
acttttccctcaccaattgtctcacctccctcctcttctcatgtccccccaaaccccgtacattccaagaaatgagcttcatt |
241 |
Q |
| |
|
|||| | |||||||||||||||||||||||||||||| ||| | ||||| ||||| ||||||||| ||||| ||||||||| |
|
|
| T |
19156855 |
acttctacctcaccaattgtctcacctccctcctcttttcaaaactccccagaccccttacattccatgaaataagcttcatt |
19156937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University