View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_89 (Length: 347)
Name: NF1408_low_89
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_89 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 23467474 - 23467158
Alignment:
| Q |
18 |
aagttctgatatggaagataagagagtgaatatactcgctgctatatcagtgataacactgattatcatcataatcattgctcgtatcttgttaaagctg |
117 |
Q |
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| T |
23467474 |
aagttctgatatggaagataagagagtgaatataatcgctgctatatcagtggtaacactgattatcatcataatcattgcacgtattttgttaaagctg |
23467375 |
T |
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| Q |
118 |
tcaaaggctttcttcctcatctgtggcgctggcgttgctgtgatccttgcagtatttggttttgtttttctcagcttaatctacaaacgcagacggagaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23467374 |
tcaaaggctttcttcctcatctgtggcgctggcgtggctgtgatccttgcagtatttggttttgtttttctcagcttaatctacaaacgcagacggagaa |
23467275 |
T |
|
| Q |
218 |
tattggaatcacagttgaaatcagaaggtcaagagattcgaatagagtacagtttcttaagaaaagttgcaggggttccaacaaagttcagatacaacga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
23467274 |
tattggaatcacagttgaaatcagaaggtcaagagattcgaatagagtacagtttcttaagaaaggttgcaggggttccaacaaagttcagatacaatga |
23467175 |
T |
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| Q |
318 |
gcttgaggaagcaacag |
334 |
Q |
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||||||||||||||||| |
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| T |
23467174 |
gcttgaggaagcaacag |
23467158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 223 - 332
Target Start/End: Original strand, 46789141 - 46789250
Alignment:
| Q |
223 |
gaatcacagttgaaatcagaaggtcaagagattcgaatagagtacagtttcttaagaaaagttgcaggggttccaacaaagttcagatacaacgagcttg |
322 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| | |||||||| | ||||||| || |||| |
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| T |
46789141 |
gaatcacagttgaaatcagaaggaagagagcttcgaatagagtacagtttcttaagaaaagttgcaggtataccaacaaaatatcgatacaaagaacttg |
46789240 |
T |
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| Q |
323 |
aggaagcaac |
332 |
Q |
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| T |
46789241 |
aagaagcaac |
46789250 |
T |
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