View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_9 (Length: 565)
Name: NF1408_low_9
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 10 - 536
Target Start/End: Complemental strand, 3685923 - 3685406
Alignment:
| Q |
10 |
tcatagggggcagtggtgcagcatgagaaactatatgtgtctcatctatcacttgttacacaacctttcatgcttggttgctcatcttatattgctagtt |
109 |
Q |
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| T |
3685923 |
tcataaggggcagtggtgcagcatgagaaactatatgtgtctcatctatcacttgttacgcaacctttcatgcttggttgctcatcttatattgctagtc |
3685824 |
T |
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| Q |
110 |
atgcttcatcagtacgtggctgagcatcacctgttactgttaattcagattgcacaactatatgttcattgactggaggtgaacatttcgagcaaatggt |
209 |
Q |
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| T |
3685823 |
gtgcttcatcagtacgtggttgaaaatcacctgttactgttaattcagattgcacaactatatgttcattgactggaggtgaacatttcgagcaaatggt |
3685724 |
T |
|
| Q |
210 |
gtcttaattgctttcgaaaaacctatgcatgcagggttatcttttgcttgcctggtttctctggtttcttgcctttatttctcttgtcaattctttcttt |
309 |
Q |
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| T |
3685723 |
gtcttaattgctttcgaaaaacctatgcatgcagggttatcttttgcttgcctggtttct---------tgcctttatttatcttgtcaattctttcttt |
3685633 |
T |
|
| Q |
310 |
attaacctttccactttgttgagggtacaaccaatgacaaatataaatattttgtccaatatttttgcaacgtgagccagggacggacctgaccatgaca |
409 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3685632 |
attaacctttccactttgttgagggtacaaccaacgacaaatagaaatattgtgtccaatatttttgcaacgtgagccagggacggacctgaccatgaca |
3685533 |
T |
|
| Q |
410 |
tggtgtggcagcctgtgtaacacaagccgtccttgcaaattgtatttgcaagactctactcctttatcgtacgcagcctgtgttattttgattgaaccac |
509 |
Q |
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| T |
3685532 |
tggtgtggcagcctgtgtaacacaagctgtccttgcaaattgtatttgcaagactctactcctttatcgtacgcagcctgtgttattttgattgaaccac |
3685433 |
T |
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| Q |
510 |
aaatgagattgaattaaaagtcgttaa |
536 |
Q |
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| T |
3685432 |
aaatgagattgaattaaaagtcgttaa |
3685406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 386
Target Start/End: Original strand, 2750777 - 2750897
Alignment:
| Q |
266 |
ttctctggtttcttgcctttatttctcttgtcaattctttctttattaacctttccactttgttgagggtacaaccaatgacaaatataaatattttgtc |
365 |
Q |
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|||||| |||||||||||||||||| |||||||||||||| ||||| | |||| | |||||||| | || ||| || |||||||| ||| ||| || | |
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| T |
2750777 |
ttctctagtttcttgcctttatttcccttgtcaattctttttttatcatccttgctgctttgttgcgagtgcaagcagcgacaaatagaaacattgtgcc |
2750876 |
T |
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| Q |
366 |
caatatttttgcaacgtgagc |
386 |
Q |
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| T |
2750877 |
caatagttttacaatgtgagc |
2750897 |
T |
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Back To:
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