View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1408_low_91 (Length: 340)

Name: NF1408_low_91
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1408_low_91
NF1408_low_91
[»] chr6 (1 HSPs)
chr6 (97-155)||(11351940-11351998)
[»] chr2 (2 HSPs)
chr2 (157-217)||(2609072-2609132)
chr2 (165-214)||(6592995-6593044)
[»] chr3 (6 HSPs)
chr3 (165-210)||(28712728-28712773)
chr3 (165-210)||(86831-86876)
chr3 (228-257)||(4474287-4474316)
chr3 (174-214)||(19404409-19404449)
chr3 (165-209)||(27178142-27178186)
chr3 (162-210)||(48348254-48348302)
[»] chr5 (3 HSPs)
chr5 (227-257)||(31080697-31080727)
chr5 (157-214)||(25910988-25911045)
chr5 (174-210)||(43098039-43098075)
[»] chr1 (2 HSPs)
chr1 (228-262)||(7060696-7060730)
chr1 (165-218)||(18632598-18632651)
[»] chr8 (2 HSPs)
chr8 (165-214)||(521526-521575)
chr8 (174-210)||(45456977-45457013)
[»] chr7 (3 HSPs)
chr7 (166-215)||(18186442-18186491)
chr7 (177-214)||(23746157-23746194)
chr7 (174-210)||(18504506-18504542)
[»] chr4 (4 HSPs)
chr4 (227-263)||(2181336-2181372)
chr4 (174-210)||(3658191-3658227)
chr4 (174-214)||(8965533-8965573)
chr4 (174-210)||(51362807-51362843)


Alignment Details
Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 11351998 - 11351940
Alignment:
Q  97 tatatttgtctggtacataagcaataaacacaaacactatataatatagtacatccttt 155  Q
    ||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11351998 tatatttctatggtacataagcaataaacacaaacactatatagtatagtacatccttt 11351940  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 2609072 - 2609132
Alignment:
Q  157 aaaaaagacttaacagtagttttcgtcccctaacttttatgaagttgtgattttagcctct 217  Q
    |||||||| |||| ||||||||||| ||||||||||||| |||||| ||||||| ||||||    
T  2609072 aaaaaagatttaatagtagttttcgccccctaacttttacgaagttttgattttggcctct 2609132  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 6593044 - 6592995
Alignment:
Q  165 cttaacagtagttttcgtcccctaacttttatgaagttgtgattttagcc 214  Q
    ||||||||||||||||| | ||||||||| | ||||||| ||||||||||    
T  6593044 cttaacagtagttttcgccacctaactttcacgaagttgcgattttagcc 6592995  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 28712773 - 28712728
Alignment:
Q  165 cttaacagtagttttcgtcccctaacttttatgaagttgtgatttt 210  Q
    ||||| || |||||||| ||||||||||||||||||||||||||||    
T  28712773 cttaatagcagttttcgccccctaacttttatgaagttgtgatttt 28712728  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 86876 - 86831
Alignment:
Q  165 cttaacagtagttttcgtcccctaacttttatgaagttgtgatttt 210  Q
    ||||| || |||||||||||||||||||| ||||||||| ||||||    
T  86876 cttaataggagttttcgtcccctaactttcatgaagttgcgatttt 86831  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 257
Target Start/End: Complemental strand, 4474316 - 4474287
Alignment:
Q  228 tacaaaaccgccctctaagttttgcaactg 257  Q
    ||||||||||||||||||||||||||||||    
T  4474316 tacaaaaccgccctctaagttttgcaactg 4474287  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 19404409 - 19404449
Alignment:
Q  174 agttttcgtcccctaacttttatgaagttgtgattttagcc 214  Q
    |||||||||||||||||||| | ||||||| ||||||||||    
T  19404409 agttttcgtcccctaactttcacgaagttgcgattttagcc 19404449  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 27178142 - 27178186
Alignment:
Q  165 cttaacagtagttttcgtcccctaacttttatgaagttgtgattt 209  Q
    ||||| || |||||||||||||||||||||| ||||||| |||||    
T  27178142 cttaatagcagttttcgtcccctaacttttacgaagttgcgattt 27178186  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 48348254 - 48348302
Alignment:
Q  162 agacttaacagtagttttcgtcccctaacttttatgaagttgtgatttt 210  Q
    |||||||| || |||||||| ||||||||||||| ||||||| ||||||    
T  48348254 agacttaatagcagttttcgccccctaacttttacgaagttgcgatttt 48348302  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 31080727 - 31080697
Alignment:
Q  227 ctacaaaaccgccctctaagttttgcaactg 257  Q
    |||||||||||||||||||||||||||||||    
T  31080727 ctacaaaaccgccctctaagttttgcaactg 31080697  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 25911045 - 25910988
Alignment:
Q  157 aaaaaagacttaacagtagttttcgtcccctaacttttatgaagttgtgattttagcc 214  Q
    |||||| |||||| || |||||||| ||||||||||| | ||||||| ||||||||||    
T  25911045 aaaaaatacttaatagcagttttcgccccctaactttcacgaagttgagattttagcc 25910988  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 43098039 - 43098075
Alignment:
Q  174 agttttcgtcccctaacttttatgaagttgtgatttt 210  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  43098039 agttttcgtcccctaacttttacgaagttgcgatttt 43098075  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 262
Target Start/End: Original strand, 7060696 - 7060730
Alignment:
Q  228 tacaaaaccgccctctaagttttgcaactgcaaca 262  Q
    |||||||||||||||||||||||||||||| ||||    
T  7060696 tacaaaaccgccctctaagttttgcaactgtaaca 7060730  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 18632651 - 18632598
Alignment:
Q  165 cttaacagtagttttcgtcccctaacttttatgaagttgtgattttagcctctt 218  Q
    ||||| || |||||||| ||||||||||||| ||||||| |||||| |||||||    
T  18632651 cttaatagcagttttcgccccctaacttttacgaagttgcgattttggcctctt 18632598  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 521526 - 521575
Alignment:
Q  165 cttaacagtagttttcgtcccctaacttttatgaagttgtgattttagcc 214  Q
    ||||| || |||||||||||||| ||||||| || |||||||||||||||    
T  521526 cttaatagcagttttcgtcccctcacttttacgacgttgtgattttagcc 521575  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 45456977 - 45457013
Alignment:
Q  174 agttttcgtcccctaacttttatgaagttgtgatttt 210  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  45456977 agttttcgccccctaacttttacgaagttgtgatttt 45457013  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 18186442 - 18186491
Alignment:
Q  166 ttaacagtagttttcgtcccctaacttttatgaagttgtgattttagcct 215  Q
    |||| ||| ||||||| ||||||||||||||||||||| |||||| ||||    
T  18186442 ttaatagtggttttcgccccctaacttttatgaagttgcgattttggcct 18186491  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 23746194 - 23746157
Alignment:
Q  177 tttcgtcccctaacttttatgaagttgtgattttagcc 214  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  23746194 tttcgtcccctaacttttacgaagttgcgattttagcc 23746157  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 18504542 - 18504506
Alignment:
Q  174 agttttcgtcccctaacttttatgaagttgtgatttt 210  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  18504542 agttttcgtcccctaactttcatgaagttgcgatttt 18504506  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 263
Target Start/End: Complemental strand, 2181372 - 2181336
Alignment:
Q  227 ctacaaaaccgccctctaagttttgcaactgcaacag 263  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  2181372 ctacaaaactgccctctaagttttgcaactgtaacag 2181336  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 3658227 - 3658191
Alignment:
Q  174 agttttcgtcccctaacttttatgaagttgtgatttt 210  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  3658227 agttttcgtcctctaacttttatgaagttgcgatttt 3658191  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 8965533 - 8965573
Alignment:
Q  174 agttttcgtcccctaacttttatgaagttgtgattttagcc 214  Q
    |||||||| ||||| ||||||| ||||||||||||||||||    
T  8965533 agttttcgcccccttacttttacgaagttgtgattttagcc 8965573  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 51362843 - 51362807
Alignment:
Q  174 agttttcgtcccctaacttttatgaagttgtgatttt 210  Q
    ||||||||||||||||||||||  |||||||||||||    
T  51362843 agttttcgtcccctaacttttacaaagttgtgatttt 51362807  T

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