View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1408_low_92 (Length: 339)
Name: NF1408_low_92
Description: NF1408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1408_low_92 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 244
Target Start/End: Complemental strand, 35766976 - 35766745
Alignment:
| Q |
13 |
aatatacttaacaatggttcaatagctgacgtttcatcaaaacccccaggaggcatcaactgtgtgtacgtctctatgttcccaggtcaagcgaaacaat |
112 |
Q |
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| T |
35766976 |
aatatacttaacaatggttcaatagctgacgtttcatcaaaacccccaggaggcatcaactgtgtgtacgtctctatgttcccaggtcaagcgaaacaat |
35766877 |
T |
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| Q |
113 |
cacaaattctctaatatccattttctcctaaccagaaacaccaacataaaaaagtttattgcgaagggctaaccaatttagacaaccattcagatacgca |
212 |
Q |
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| T |
35766876 |
cacaaattctctaatatccattttctcctaaccagaaacaccaacataaaaaagtttattgcgaagggccaaccaatttagacaaccattcagatacaca |
35766777 |
T |
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| Q |
213 |
ccatcattcacaccatggtttgtattaaaagg |
244 |
Q |
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| T |
35766776 |
ccatcattcacaccatggtttgtattaaaagg |
35766745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 7 - 138
Target Start/End: Complemental strand, 36260217 - 36260088
Alignment:
| Q |
7 |
tccaataatatacttaacaatggttcaatagctgacgtttcatcaaaacccccaggaggcatcaactgtgtgtacgtctctatgttcccaggtcaagcga |
106 |
Q |
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| T |
36260217 |
tccaacaatatacataccgatggctcaataggtgacatttcatcaaaaccgcaaggaggcatcaactttgtgtatgtctc--tgtttccagatcaagtga |
36260120 |
T |
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| Q |
107 |
aacaatcacaaattctctaatatccattttct |
138 |
Q |
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| T |
36260119 |
aacaatcacaaattttttaacattcattttct |
36260088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 36255293 - 36255221
Alignment:
| Q |
44 |
tttcatcaaaacccccaggaggcatcaactgtgtgtacgtctctatgttcccaggtcaagcgaaacaatcacaaa |
118 |
Q |
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| T |
36255293 |
tttcatcaaaaccacgcggaggcatcagctgcgtgtatgtctct--gttcccagatcaagcgcaacaatcacaaa |
36255221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 20495586 - 20495533
Alignment:
| Q |
174 |
cgaagggctaaccaatttagacaaccattcagatacgcaccatcattcacacca |
227 |
Q |
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| T |
20495586 |
cgaagagccaaccaattcagactaccattcaaatacacaccatcattcacacca |
20495533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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