View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14090_high_1 (Length: 343)

Name: NF14090_high_1
Description: NF14090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14090_high_1
NF14090_high_1
[»] chr2 (9 HSPs)
chr2 (1-327)||(39845156-39845494)
chr2 (118-319)||(35162067-35162271)
chr2 (118-327)||(44630855-44631067)
chr2 (118-319)||(44797843-44798047)
chr2 (156-327)||(39840359-39840530)
chr2 (34-86)||(35162014-35162065)
chr2 (36-86)||(44631069-44631118)
chr2 (36-86)||(44798049-44798098)
chr2 (3-60)||(39840289-39840348)


Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 39845156 - 39845494
Alignment:
Q  1 tctctgttaccatgtggtgagtctgttcgttactcgttatgttgattcactattcattccctccctgcaattcaatggatatatatattcattctgtcag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  39845156 tctctgttaccatgtggtgagtctgttcgttactcgttatgttgattcactattcattccctccctgcaattcaatggatatatatattcattctgttag 39845255  T
Q  101 cataagaaagaaattaacttgttggaagatgattaatgtcatgataatgtgttccattgtagttaatttaatcgatgattaattgttcctttctctactt 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39845256 cataagaaagaaattaacttgttggaagatgattaatgacatgataatgtgttccattgtagttaatttaatcgatgattaattgttcctttctctactt 39845355  T
Q  201 ttctctcagattttaatca------------aatcaaaaatcaaatcgaaaaggataggcttatcaaatgtgtcactttggcaatacaggattataattc 288  Q
    |||| ||||||||||||||            |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  39845356 ttctatcagattttaatcaaatcgaaaatcgaatcgaaaatcaaatcgaaaaggataggcttatcaaatgtgtcactttggcaatacgggattataattc 39845455  T
Q  289 acaaactcagaacgactaccaattggtcgttaatgatga 327  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  39845456 acaaactcggaacgactaccaattggtcgttaatgatga 39845494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 118 - 319
Target Start/End: Original strand, 35162067 - 35162271
Alignment:
Q  118 cttgttggaagatgattaatgtcatgataatgtgttccattgtagttaatttaatc---gatgattaattgttcctttctctacttttctctcagatttt 214  Q
    ||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||   ||||||||||| ||||||||||||||||||| |||||||||    
T  35162067 cttgttggaagatgattaataacatgataatgtgttccattgtagctaatttaatcatcgatgattaatttttcctttctctacttttctatcagatttt 35162166  T
Q  215 aatcaaatcaaaaatcaaatcgaaaaggataggcttatcaaatgtgtcactttggcaatacaggattataattcacaaactcagaacgactaccaattgg 314  Q
    ||| | |||||| |||  | | ||||||||||| | | |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  35162167 aatgatatcaaagatcctaccaaaaaggataggataaccaaatgtgccactttggcaatacgggattataattcacaaactcagaacgactaccaattgg 35162266  T
Q  315 tcgtt 319  Q
    |||||    
T  35162267 tcgtt 35162271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 118 - 327
Target Start/End: Complemental strand, 44631067 - 44630855
Alignment:
Q  118 cttgttggaagatgattaatgtcatgataatgtgttccattgtagttaatttaatcg---atgattaattgttcctttctctacttttctctcagatttt 214  Q
    ||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||    |||||||||| ||||||||||||||||||| |||||||||    
T  44631067 cttgttggaagatgattaataacatgataatgtgttccattgtagctaatttaatcatctatgattaatttttcctttctctacttttctatcagatttt 44630968  T
Q  215 aatcaaatcaaaaatcaaatcgaaaaggataggcttatcaaatgtgtcactttggcaatacaggattataattcacaaactcagaacgactaccaattgg 314  Q
    ||| | |||||| |||  | | ||||||||||| | | |||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  44630967 aatgagatcaaagatcctaccaaaaaggataggataaccaaatgtgccactttggcaatacgggattataattcacaaactcagaaccactaccaattgg 44630868  T
Q  315 tcgttaatgatga 327  Q
    |||||||||||||    
T  44630867 tcgttaatgatga 44630855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 118 - 319
Target Start/End: Complemental strand, 44798047 - 44797843
Alignment:
Q  118 cttgttggaagatgattaatgtcatgataatgtgttccattgtagttaatttaatcg---atgattaattgttcctttctctacttttctctcagatttt 214  Q
    ||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||    |||||||||| ||||||||||||||||||| |||||||||    
T  44798047 cttgttggaagatgattaataacatgataatgtgttccattgtagctaatttaatcatctatgattaatttttcctttctctacttttctatcagatttt 44797948  T
Q  215 aatcaaatcaaaaatcaaatcgaaaaggataggcttatcaaatgtgtcactttggcaatacaggattataattcacaaactcagaacgactaccaattgg 314  Q
    ||| | |||||| |||  | | ||||||||||| | | |||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  44797947 aatgagatcaaagatcctaccaaaaaggataggataaccaaatgtgccactttggcaatacgggattataattcacaaactcagaaccactaccaattgg 44797848  T
Q  315 tcgtt 319  Q
    |||||    
T  44797847 tcgtt 44797843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 156 - 327
Target Start/End: Original strand, 39840359 - 39840530
Alignment:
Q  156 attgtagttaatttaatcgatgattaattgttcctttctctacttttctctcagattttaatcaaatcaaaaatcaaatcgaaaaggataggcttatcaa 255  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||| | |||||| |||  ||||||||||||||| | | |||    
T  39840359 attgtagctaatttaatccatgattaattgttcctttctctacttttctatcagattttaatgagatcaaagatcctatcgaaaaggataggataaccaa 39840458  T
Q  256 atgtgtcactttggcaatacaggattataattcacaaactcagaacgactaccaattggtcgttaatgatga 327  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  39840459 atgtgccactttggcaatacaagattataattcacaaactcagaaccactaccaattggtcgttattgatga 39840530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 35162014 - 35162065
Alignment:
Q  34 tcgttatgttgattcactattcattccctccctgcaattcaatggatatatat 86  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  35162014 tcgttatgttgattcactattcattccct-gctgcaattcaatggatatatat 35162065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 44631118 - 44631069
Alignment:
Q  36 gttatgttgattcactattcattccctccctgcaattcaatggatatatat 86  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  44631118 gttatgttgattcactattcattccct-gctgcaattcaatggatatatat 44631069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 44798098 - 44798049
Alignment:
Q  36 gttatgttgattcactattcattccctccctgcaattcaatggatatatat 86  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  44798098 gttatgttgattcactattcattccct-gctgcaattcaatggatatatat 44798049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 39840289 - 39840348
Alignment:
Q  3 tctgttaccatgtggtgagtctgttcgttactc--gttatgttgattcactattcattcc 60  Q
    ||||||||||  |||||||||||||||||| |   |||||||||||||||||||||||||    
T  39840289 tctgttaccaactggtgagtctgttcgttagttatgttatgttgattcactattcattcc 39840348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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