View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14090_high_3 (Length: 287)
Name: NF14090_high_3
Description: NF14090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14090_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 29 - 276
Target Start/End: Original strand, 9580081 - 9580332
Alignment:
| Q |
29 |
tcgtatctgaaactccagcctccttacacaatgatagggaataaagtcagttgaacctcctttttaaggtgactccaccaacctattcgtcactccaaaa |
128 |
Q |
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| T |
9580081 |
tcgtatctgaaactctagcctccttacacaatgatagggaataaagtcagtcgaaactcctttt-aaggtgactccaccaacctattcgtcgctccaaaa |
9580179 |
T |
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| Q |
129 |
acatgtgccctcgcctccgcccatatttctactaaaccagtttgaaaaccaattatgattacctcccgatcccttactccactctc----tcttacttaa |
224 |
Q |
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| T |
9580180 |
aaatgtgccctcgcttccccccatatttctacgaaaccagtttgaaaaccaattatgattacctcccaatcccttactccactctctcaatctctcttaa |
9580279 |
T |
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| Q |
225 |
-taaagagacgaatctcttgtgttacatttaattttcctcatctcttccctat |
276 |
Q |
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| T |
9580280 |
ttaaagagacggatctcacgtgttacatttaattttccccatctcttccctat |
9580332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 261
Target Start/End: Original strand, 9585620 - 9585821
Alignment:
| Q |
43 |
ccagcctccttacacaatgatagggaataaagtcagttgaacctcctttttaaggtgactccaccaacctattcgtcactccaaaaacatgtgccctcgc |
142 |
Q |
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| T |
9585620 |
ccaggctccttacacaatgatagggaataaagccgatcgatcctcctttttaatgtggttccaccaacccattcgtcgctccaaaa--atgtgtcctcac |
9585717 |
T |
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| Q |
143 |
ctccgcccatatttctactaaaccagtttgaaaaccaattatgattacctcccgatcccttactccactctctcttacttaa-taaagagacgaatctct |
241 |
Q |
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| T |
9585718 |
ctcccc----------------ccggtttgaaaaccaattatgattatctcccgatcccctactccactctcaatctcttaaccaaagagacgagtatct |
9585801 |
T |
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| Q |
242 |
tgtgttacatttaattttcc |
261 |
Q |
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| T |
9585802 |
cgtgttacatttaattttcc |
9585821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 176
Target Start/End: Complemental strand, 32718236 - 32718100
Alignment:
| Q |
40 |
actccagcctccttacacaatgatagggaataaagtcagttgaa-cctcctttttaaggtgactccaccaacctattcgtcactccaaaaacatgtgccc |
138 |
Q |
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|||| ||| |||||||| ||||| |||||||||| |||| | || || |||||||||||||||| |||||||| |||| ||| |||||||| ||| || |
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| T |
32718236 |
actctagcttccttacataatgacagggaataaa-tcaggtcaaaccccctttttaaggtgactgcaccaacccattcatcagtccaaaaaactgtatcc |
32718138 |
T |
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| Q |
139 |
tcgcctccgcccatatttctactaaaccagtttgaaaa |
176 |
Q |
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| T |
32718137 |
ttgcctctccccatatttctactaacccggtttaaaaa |
32718100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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