View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14090_low_4 (Length: 268)
Name: NF14090_low_4
Description: NF14090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14090_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 39845172 - 39844916
Alignment:
| Q |
1 |
ccacatggtaacagagattgacgaattgcgcttcttctgcggggtttcagaggagcagcaggcattttttgatgtacgtctgagagaataagaaagaaga |
100 |
Q |
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| T |
39845172 |
ccacatggtaacagagattgacgaattgcgcttcttctgcggggtttcagaggagcagcaggcattttttgatgtacgtctgaaagaataagaaagaaga |
39845073 |
T |
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| Q |
101 |
agcaattatgatagttatagagattagggtttgttcaaagagacgctcaatttctcaaaatccctaagccccaattctctacagtggaacacattatcat |
200 |
Q |
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| T |
39845072 |
agcaattatgatagttatagaaattagggtttgttcaaagagacgctcaatttctcaaaatccctaagccccaattctctacagtggaacacattatcat |
39844973 |
T |
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| Q |
201 |
cttccattaaattcattcaaccatatccattaacaaacaaacaatattgagaataat |
257 |
Q |
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| T |
39844972 |
cttccattaaattcattcaaccatatccattaacaaacaaacaatattgagaataat |
39844916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 30 - 127
Target Start/End: Complemental strand, 39840259 - 39840160
Alignment:
| Q |
30 |
gcttcttctgcggggtttcagaggagcagcaggcattttttgatgtacgtctga--gagaataagaaagaagaagcaattatgatagttatagagattag |
127 |
Q |
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| T |
39840259 |
gcttattctgcggggtttcagaggagcagcgggcattttttgacgtacgtctgagagagaataagaaagaagaaccaattatgatagttatagaaattag |
39840160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 35161822 - 35161759
Alignment:
| Q |
147 |
tcaatttctcaaaatccctaagccccaattctctacagtggaacacattatcatcttccattaa |
210 |
Q |
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| T |
35161822 |
tcaattactcaaaatccctaagccccaattctctaaagtggaacacattatcatcttccattaa |
35161759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 39840119 - 39840053
Alignment:
| Q |
147 |
tcaatttctcaaaatccctaagccccaattctctacagtggaacaca---ttatcatcttccattaa |
210 |
Q |
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| T |
39840119 |
tcaatttctcaaaatccctaagccacaattctctacagtggaacacattattatcatcttccattaa |
39840053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 44798289 - 44798350
Alignment:
| Q |
147 |
tcaatttctcaaaatccctaag-ccccaattctctacagtggaacacattatcatcttccattaa |
210 |
Q |
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| T |
44798289 |
tcaatttctcaaaatccctaagcccccaattc---acagcggaacacattatcatcttccattaa |
44798350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 44631200 - 44631251
Alignment:
| Q |
62 |
gcattttttgatgtacgtct--gagagaataagaaagaagaagcaattatga |
111 |
Q |
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| T |
44631200 |
gcattttttgatgtacgtctgagagagaataataaagaagaagcaattatga |
44631251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 44798180 - 44798231
Alignment:
| Q |
62 |
gcattttttgatgtacgtct--gagagaataagaaagaagaagcaattatga |
111 |
Q |
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| T |
44798180 |
gcattttttgatgtacgtctgagagagaataataaagaagaagcaattatga |
44798231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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