View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14091_low_1 (Length: 1101)
Name: NF14091_low_1
Description: NF14091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14091_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 929; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 929; E-Value: 0
Query Start/End: Original strand, 20 - 1087
Target Start/End: Complemental strand, 39396581 - 39395515
Alignment:
| Q |
20 |
gtacctatttgttttgtgtcaaggatcaatatcaaatgaaacatgttcaataactttactgaatcaagatttgtccaaaatacggcactcgcagcatcca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||| |||||| |
|
|
| T |
39396581 |
gtacctatttgttttgtgtcaaggatcaatatcaaatgaaacatgttcaataacttcactgaatcaagatgtgtccaaaatacggcacttgcaacatcca |
39396482 |
T |
|
| Q |
120 |
agtcctccctctttcttgtcaaatacatatactttgcacattctattaagttcaatagctgctgcattgttgtgtaagaaactctcaaagaagattgata |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39396481 |
agtcctccctctttcttgtcaaatacatatactttgcacattctattaagttcaatagctgctgcatttttgtgtaagaaactctcaaagaagattgata |
39396382 |
T |
|
| Q |
220 |
agtactccatgcccttatatttgggtagtacacgtgagattatctttgttcaatctttcaatgtaccaaatatgaatctcattgttgtgtggtacttttt |
319 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
39396381 |
agtactccatgcc-ttatatttgggtagtacacgtgagattatctttgttcaatctttcaatgtaccagatatgaatctcattgtcatgtggtacttttt |
39396283 |
T |
|
| Q |
320 |
cgtatcataatctatttttcctcttcattcaaatgtcccaaataaggatgaccttttagagtattttctaattcgtcttaggtggtctaaatgattgttt |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39396282 |
cgtatcataatctatttttcctcttcattcaaatgtcccaaataaggatgaccttttagggtattttctaattcgtcttaggtggtctaaatgattgttt |
39396183 |
T |
|
| Q |
420 |
tagtttgatttgggggaaattatacgccacttttcaaacaggtattcaaacaaataaaatagaagaaacaaacagacacgaaatagggtctcaaaatagg |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
39396182 |
tagtttgatttgggggaaattatacgccacttttcaaacaggtattcaaacaaataaaatagaagaaaccaacagacacgaaatagggtctcaaaatagg |
39396083 |
T |
|
| Q |
520 |
tgtacgtataatctgtgaaactatgtacacannnnnnnnaaacaaaaattatgtacacattaaacaaatgcacaaagtaaaacaatatgaacaatattac |
619 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39396082 |
tgtacgtataatctgtgaaattatgtacacattttttttaaacaaaaattatgtacacattaaacaaatgcacaaagtaaaacaatatgaacagtattac |
39395983 |
T |
|
| Q |
620 |
agtctaattgtatttagtcactgtgtaatttgcattacgtttgtagatgttcttcattgggaagttcttttcgggtattattatnnnnnnnnnnnnnnnn |
719 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39395982 |
agtctaattgtatttagtcactgtgtaatttgcattacgtttgtagatgttcttcattgggaagttcttttcgggtattattattagtagcagtagtagt |
39395883 |
T |
|
| Q |
720 |
nctttttctccttataagatcaccaaatcttctcagcaatgctttactttttctgttgtttctatcagcctcagaatcatcaaaatgtgattcatctaaa |
819 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39395882 |
actttttctccttataagatcaccaaatcttctcagcaatgctttactttttctgttgtttctatcagcctcagaatcatcaaaatgtgattcatctaaa |
39395783 |
T |
|
| Q |
820 |
tgatcaaagtcatcatgaattcccatttcaacatgtgtttctgaatcaggtgaatcgtcctccacttcatcaaatattgaaccctttagtgtatcatctt |
919 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39395782 |
tgatcaaaatcttcatgaattcccatttcaacatgtgtttctgaatcaggtgaatcgtcctccacttcatcaaatattgaaccctttagtgtatcatctt |
39395683 |
T |
|
| Q |
920 |
ctacaataatttctttattaacaacctcttcattattcccccctttgtgttgctgcttatgtggtgttatcatgtcttttatattaagactaaaagtttt |
1019 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39395682 |
ctacaataatttctttattaacaacctcttcattattcccccctttgtgttgctgcttatgtggtgttatcatgtcttttatattaagactaaaagtttt |
39395583 |
T |
|
| Q |
1020 |
gcttaaactttttgattctttaggctccttatgatgttgttctcctgagtgatgatgatgcccctttg |
1087 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39395582 |
gcttaaactttttgattctttaggctccttatgatgttgttctcctgagtgatgatgatgcccctttg |
39395515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 43597970 - 43597914
Alignment:
| Q |
161 |
tctattaagttcaatagctgctgcattgttgtgtaagaaactctcaaagaagattgataa |
220 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||| |||||||||||||| ||||| |
|
|
| T |
43597970 |
tctattaagttcaatagctgc---atttttgtgtaagaacctctcaaagaagatcgataa |
43597914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 37104294 - 37104369
Alignment:
| Q |
206 |
aaagaagattgataagtactccatgccct-tatatttgggtagtacacgtgagattatctttgttcaatctttcaa |
280 |
Q |
| |
|
||||| |||||||||||||| |||||||| || || ||||| ||||| | ||||||||||||||| ||||||||| |
|
|
| T |
37104294 |
aaagatgattgataagtacttcatgccctataaatatgggtggtacatgcaagattatctttgttcgatctttcaa |
37104369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University