View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14092_low_1 (Length: 589)

Name: NF14092_low_1
Description: NF14092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14092_low_1
NF14092_low_1
[»] chr6 (14 HSPs)
chr6 (12-574)||(13264065-13264628)
chr6 (12-232)||(24113912-24114135)
chr6 (12-168)||(24917748-24917909)
chr6 (14-121)||(34840282-34840390)
chr6 (15-101)||(633240-633327)
chr6 (15-101)||(6378759-6378846)
chr6 (14-115)||(17959499-17959601)
chr6 (66-280)||(8220674-8220901)
chr6 (15-75)||(18641055-18641115)
chr6 (161-294)||(8221063-8221199)
chr6 (109-168)||(18641121-18641180)
chr6 (12-42)||(633206-633236)
chr6 (12-42)||(6378850-6378880)
chr6 (12-46)||(24917906-24917940)
[»] chr1 (20 HSPs)
chr1 (22-237)||(18318823-18319039)
chr1 (12-168)||(33166060-33166217)
chr1 (12-168)||(51522007-51522164)
chr1 (12-280)||(8470017-8470298)
chr1 (12-163)||(47298709-47298864)
chr1 (14-121)||(2476527-2476635)
chr1 (14-115)||(48386343-48386445)
chr1 (12-115)||(48406114-48406218)
chr1 (12-105)||(17679518-17679612)
chr1 (12-105)||(17785116-17785210)
chr1 (15-101)||(31469851-31469938)
chr1 (14-115)||(45240870-45240972)
chr1 (38-166)||(38837843-38837975)
chr1 (123-168)||(51522167-51522212)
chr1 (133-168)||(38837793-38837828)
chr1 (12-42)||(31469817-31469847)
chr1 (12-46)||(47298861-47298895)
chr1 (12-46)||(51521945-51521979)
chr1 (123-168)||(47298656-47298701)
chr1 (14-46)||(17785056-17785088)
[»] chr4 (16 HSPs)
chr4 (12-168)||(34435684-34435841)
chr4 (13-121)||(16173249-16173358)
chr4 (14-121)||(3616652-3616760)
chr4 (14-121)||(8993518-8993626)
chr4 (14-121)||(13112296-13112404)
chr4 (37-168)||(33605840-33605976)
chr4 (15-101)||(46915741-46915828)
chr4 (14-121)||(3531538-3531646)
chr4 (12-105)||(53182587-53182681)
chr4 (15-101)||(2213546-2213632)
chr4 (12-46)||(46915859-46915893)
chr4 (12-46)||(53182678-53182712)
chr4 (133-170)||(53182519-53182556)
chr4 (12-42)||(2213636-2213666)
chr4 (135-168)||(23539734-23539767)
chr4 (123-168)||(34435636-34435681)
[»] chr2 (12 HSPs)
chr2 (13-168)||(31186386-31186542)
chr2 (15-170)||(31206100-31206255)
chr2 (12-168)||(16441952-16442109)
chr2 (67-168)||(40879959-40880061)
chr2 (14-121)||(7586732-7586840)
chr2 (15-101)||(8853781-8853868)
chr2 (15-101)||(12856743-12856830)
chr2 (14-115)||(30820818-30820920)
chr2 (14-103)||(22349830-22349920)
chr2 (12-42)||(8853747-8853777)
chr2 (12-42)||(12856709-12856739)
chr2 (243-287)||(31186242-31186286)
[»] chr7 (10 HSPs)
chr7 (12-168)||(32128430-32128591)
chr7 (12-168)||(26813895-26814056)
chr7 (14-121)||(36520238-36520346)
chr7 (12-121)||(22658435-22658545)
chr7 (15-101)||(22192933-22193020)
chr7 (12-46)||(26813833-26813867)
chr7 (12-42)||(22192899-22192929)
chr7 (12-46)||(26813864-26813898)
chr7 (12-46)||(32128588-32128622)
chr7 (163-279)||(22658855-22658974)
[»] chr5 (9 HSPs)
chr5 (15-168)||(9273435-9273587)
chr5 (14-121)||(27944224-27944332)
chr5 (14-121)||(29617806-29617914)
chr5 (14-121)||(32974799-32974907)
chr5 (14-121)||(40890598-40890706)
chr5 (15-101)||(4578750-4578837)
chr5 (161-270)||(27406327-27406439)
chr5 (12-46)||(4578685-4578719)
chr5 (163-279)||(30646872-30646991)
[»] scaffold0004 (2 HSPs)
scaffold0004 (12-168)||(104566-104727)
scaffold0004 (12-46)||(104535-104569)
[»] chr3 (27 HSPs)
chr3 (12-170)||(50018773-50018935)
chr3 (12-168)||(33189082-33189242)
chr3 (14-121)||(30416659-30416767)
chr3 (14-121)||(42562633-42562741)
chr3 (15-101)||(42599744-42599831)
chr3 (14-121)||(6046894-6047002)
chr3 (15-101)||(25789037-25789124)
chr3 (15-101)||(25830994-25831081)
chr3 (15-101)||(47145891-47145978)
chr3 (14-115)||(17468246-17468348)
chr3 (12-105)||(51428812-51428906)
chr3 (12-168)||(33750433-33750593)
chr3 (14-121)||(10425896-10426004)
chr3 (12-46)||(42599862-42599896)
chr3 (42-106)||(21230687-21230752)
chr3 (133-168)||(50018994-50019029)
chr3 (12-42)||(25789128-25789158)
chr3 (12-42)||(25831085-25831115)
chr3 (12-46)||(33750371-33750405)
chr3 (12-42)||(47145857-47145887)
chr3 (12-46)||(50018681-50018715)
chr3 (12-46)||(50018742-50018776)
chr3 (12-46)||(51428781-51428815)
chr3 (42-106)||(21227011-21227076)
chr3 (139-168)||(26158209-26158238)
chr3 (123-160)||(33750596-33750633)
chr3 (129-170)||(51428933-51428974)
[»] scaffold1240 (2 HSPs)
scaffold1240 (12-105)||(932-1026)
scaffold1240 (12-46)||(1054-1088)
[»] chr8 (6 HSPs)
chr8 (12-168)||(30530782-30530927)
chr8 (14-121)||(1956483-1956591)
chr8 (15-107)||(17743411-17743504)
chr8 (14-104)||(15055365-15055456)
chr8 (123-164)||(30530738-30530779)
chr8 (134-170)||(17743501-17743537)
[»] scaffold0658 (3 HSPs)
scaffold0658 (65-168)||(7228-7331)
scaffold0658 (15-48)||(7332-7365)
scaffold0658 (128-160)||(7188-7220)


Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 12 - 574
Target Start/End: Complemental strand, 13264628 - 13264065
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgta 110  Q
    |||||||||||||||||| ||| || |||||||||||| || |||||| ||||||||||||||||||||| || ||||  ||||||||||||||||||||    
T  13264628 atgaatgagatttgtgaagttggaaatagatatgagtctctatatataagtacattgtgtggtggacactgacagattcaaaataagttattgtattgta 13264529  T
Q  111 ttaaaacaaacggtggggatagttattaaagcaaatagtatgtgaaataatgggcacatattccaacgaatggagatagaccttcaaatagtatgtgaaa 210  Q
    |||||  |||  ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  13264528 ttaaagtaaatagtggggataattattaaagcaaatagtatgtgaaataatgggcacacattccaacgaatggagatagaccttcaaatagtatatgaaa 13264429  T
Q  211 taagtcaaggataattattaaaacaaaaagtgg--gactagacaacacaaacaattattaaaataaacactgagaattagataacattatt----aaagc 304  Q
    |||||||  ||||||||||||| |||| |||||  |||||||||||||  ||||||||||||  |||||||| || ||  || ||||| ||     | |     
T  13264428 taagtcacagataattattaaagcaaacagtggacgactagacaacac--acaattattaaagcaaacactgggattt--attacattttttacacatgt 13264333  T
Q  305 nnnnnnntcatggtacgtttgcaacnnnnnnntaaataaatcatggtacgtaaatatttatcttgtataaaagtgtaaaagtggcatacacgtataccgt 404  Q
           |||| ||||||||||| |       |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13264332 aataaaatcatagtacgtttgcaccaaaaaaataaaaaaatcatggtacgtaaatatttatcttgtataaaagtgtaaaagtggcatacacgtataccgt 13264233  T
Q  405 cggtgtacagaaagagaaggaatatttttgttctcgtttaacttataatagcgggaaacaccgaaacagaaccgtttcaaatttcaaaacaaaaccaaat 504  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||    
T  13264232 cggtgtacagaaagagaaggaatattcttgttctcgtttaacttataatagcgg--------gaaacagaaccgtttcaaatttcaaaacaaaaccaaat 13264141  T
Q  505 ccacaaaccttattattctcgtcttct------tcaaaaccttatctttttccttccaattttcattcaaaaacat 574  Q
    |||||||||||||||||||||||||||      ||||||||||||||||||||| |||||||||||||||||||||    
T  13264140 ccacaaaccttattattctcgtcttcttcaaaatcaaaaccttatctttttcctaccaattttcattcaaaaacat 13264065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 24113912 - 24114135
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgta 110  Q
    ||||||||||||||||| |||| ||||| ||||||||| || |||||| |||||||||||  || ||||| ||||||| |||||||||||||||||||||    
T  24113912 atgaatgagatttgtgatattggaagtatatatgagtctctatatataagtacattgtgttctgtacactgacggattcgaaataagttattgtattgta 24114011  T
Q  111 ttaaaacaaacggtggggatagttattaaagcaaatagtatgtgaaataatgggcacatattccaacgaatggagatagaccttcaaatag--tatgtga 208  Q
    ||| | |||||  | | |||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||  ||||||||||||||  |||||||    
T  24114012 ttatagcaaacaatagagataattattaaagcaaatattatgtgaaataatgggcacacattccaacgaatggaggaagaccttcaaatagtatatgtga 24114111  T
Q  209 aataagtcaaggataattattaaa 232  Q
    ||||||||| ||||||||||||||    
T  24114112 aataagtcacggataattattaaa 24114135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 12 - 168
Target Start/End: Complemental strand, 24917909 - 24917748
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgta 110  Q
    |||||||||||||||||||||| ||| || ||||||||||| |||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  24917909 atgaatgagatttgtgaaattggaagcaggtatgagtccctatatataagtaaattgtgtggtggacactgacggatttgaaataagttattgtattgta 24917810  T
Q  111 ttaaaacaaacggtggggatagttattaaa----gcaaatagtatgtgaaataatgggcaca 168  Q
    ||||| ||||| |||| |||| ||||||||    ||||||||||||||||||||||||||||    
T  24917809 ttaaagcaaacagtggagataattattaaagcaagcaaatagtatgtgaaataatgggcaca 24917748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 34840282 - 34840390
Alignment:
Q  14 gaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgtatt 112  Q
    ||||||||||||||| |||| ||||||| |||||||||| |||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  34840282 gaatgagatttgtgatattggaagtagacatgagtccctatatataagtacattgtgtggtggacactgacggattcgaaataagttattgtattgtatt 34840381  T
Q  113 aaaacaaac 121  Q
    ||| |||||    
T  34840382 aaagcaaac 34840390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 633240 - 633327
Alignment:
Q  15 aatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttat 101  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| | ||||||||||||||||||||    
T  633240 aatgagacttgtgaaattgaaagtagatatgagtccctatatataagtacattgtgtggtggacattgacggatttgaaataagttat 633327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 6378846 - 6378759
Alignment:
Q  15 aatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttat 101  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| | ||||||||||||||||||||    
T  6378846 aatgagacttgtgaaattgaaagtagatatgagtccctatatataagtacattgtgtggtggacattgacggatttgaaataagttat 6378759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 17959601 - 17959499
Alignment:
Q  14 gaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgtatt 112  Q
    ||||||||||||||| |||| ||||||| |||||||||| |||||| |||||||||||||  |||||| ||||||| |||||||||||||||||||||||    
T  17959601 gaatgagatttgtgatattggaagtagacatgagtccctatatataagtacattgtgtggacgacactaacggattcgaaataagttattgtattgtatt 17959502  T
Q  113 aaa 115  Q
    |||    
T  17959501 aaa 17959499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 66 - 280
Target Start/End: Original strand, 8220674 - 8220901
Alignment:
Q  66 ttgtgtggtggacact-acggatttgaaataagttattgtattgtattaaaacaaacggtggggatagttattaaag---caaatagtatg------tga 155  Q
    ||||||||||||| |  ||||||| ||||||||||||||||||||||||||  |||| ||||||||| |||||||||   | |||| |||       | |    
T  8220674 ttgtgtggtggacccagacggattcgaaataagttattgtattgtattaaagtaaacagtggggataattattaaagtcacgaataatataattttatta 8220773  T
Q  156 aataatgggcacatattccaacgaatggagatagaccttcaaatagtatgtgaaat--aagtcaaggataattattaaaacaaaaagt-gggactagaca 252  Q
    || | |||||||| ||||||  ||||||||  ||||||||||||||||||||||||  |||||| ||||||||  |||| |||| | | |||||||||||    
T  8220774 aaaattgggcacacattccattgaatggaggaagaccttcaaatagtatgtgaaataaaagtcacggataattggtaaagcaaacactagggactagaca 8220873  T
Q  253 acacaaacaattattaaaataaacactg 280  Q
    ||||  ||||||||||||  ||||||||    
T  8220874 acactgacaattattaaagcaaacactg 8220901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 18641055 - 18641115
Alignment:
Q  15 aatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtg 75  Q
    |||||||||||||||| || |||||||||||||||||| |||||| |||||||||||||||    
T  18641055 aatgagatttgtgaaaatggaagtagatatgagtccctatatataagtacattgtgtggtg 18641115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 161 - 294
Target Start/End: Original strand, 8221063 - 8221199
Alignment:
Q  161 tgggcacatattccaacgaatggagatagaccttcaaatagtatgtgaaat--aagtcaaggataattattaaaacaaaaagt-gggactagacaacaca 257  Q
    |||||||| ||||||||||||||||  ||||||||||||||| | ||||||  |||||| ||||||||  |||| |||| | | ||||||| |||||||     
T  8221063 tgggcacacattccaacgaatggaggaagaccttcaaatagtgtttgaaataaaagtcacggataattggtaaagcaaacactagggactaaacaacact 8221162  T
Q  258 aacaattattaaaataaacactgagaattagataaca 294  Q
     ||||||||||||  |||||||| | |||||| ||||    
T  8221163 gacaattattaaagcaaacactggggattagacaaca 8221199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 168
Target Start/End: Original strand, 18641121 - 18641180
Alignment:
Q  109 tattaaaacaaacggtggggatagttattaaagcaaatagtatgtgaaataatgggcaca 168  Q
    ||||||| ||||| |||| |||| ||||||||||||||||||||||||||||||| ||||    
T  18641121 tattaaagcaaacagtggagataattattaaagcaaatagtatgtgaaataatggacaca 18641180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 42
Target Start/End: Original strand, 633206 - 633236
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagat 42  Q
    |||||||||||||||||||||||||||||||    
T  633206 atgaatgagatttgtgaaattgaaagtagat 633236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 42
Target Start/End: Complemental strand, 6378880 - 6378850
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagat 42  Q
    |||||||||||||||||||||||||||||||    
T  6378880 atgaatgagatttgtgaaattgaaagtagat 6378850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 24917940 - 24917906
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatga 46  Q
    ||||||||||||| |||||||||||||||||||||    
T  24917940 atgaatgagatttatgaaattgaaagtagatatga 24917906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 1e-61; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 22 - 237
Target Start/End: Complemental strand, 18319039 - 18318823
Alignment:
Q  22 tttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgtattaaaacaaa 120  Q
    ||||||| |||| |||||||||||||| ||| |||||| ||| ||||||||||||||||| ||||||| ||||||||||||| |||||||||||| ||||    
T  18319039 tttgtgatattggaagtagatatgagttcctatatataagtatattgtgtggtggacactgacggattcgaaataagttattatattgtattaaagcaaa 18318940  T
Q  121 cggtggggatagttattaaagcaaatagtatgtgaaataatgggcacatattccaacgaatggagatagaccttcaaatagtatgtgaaataagtcaagg 220  Q
    |  || ||||| ||||||||| ||||| ||||||||||||||| |||| |||||||||||| |||  |||||||||||||||||||||||||||||| ||    
T  18318939 cattgaggataattattaaaggaaataatatgtgaaataatggtcacacattccaacgaattgaggaagaccttcaaatagtatgtgaaataagtcacgg 18318840  T
Q  221 ataattattaaaacaaa 237  Q
    |||||||||||| ||||    
T  18318839 ataattattaaagcaaa 18318823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 12 - 168
Target Start/End: Original strand, 33166060 - 33166217
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgta 110  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||| ||||||| ||||||| |||||||||||||    
T  33166060 atgaatgagatttgtgaaattggaagtagatatgagtccctatatataagtacattgtgtggtggacactgacggattcgaaataaattattgtattgta 33166159  T
Q  111 ttaaaacaaacggtggggatagttattaaagcaaatagtatgtgaaataatgggcaca 168  Q
    ||||| ||||| |||  |||| ||||||||||||||||||||||||||||||||||||    
T  33166160 ttaaagcaaacagtgaagataattattaaagcaaatagtatgtgaaataatgggcaca 33166217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 12 - 168
Target Start/End: Original strand, 51522007 - 51522164
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgta 110  Q
    ||||||||||||||| |||||| |||||||||||||||||| ||||||  |||| ||||||||||||| | |||||||||||||||||||||||||||||    
T  51522007 atgaatgagatttgttaaattggaagtagatatgagtccctatatataaatacaatgtgtggtggacattgacggatttgaaataagttattgtattgta 51522106  T
Q  111 ttaaaacaaacggtggggatagttattaaagcaaatagtatgtgaaataatgggcaca 168  Q
    ||||| |||||  | | |||| ||||||||||||||||||| ||||||||||||||||    
T  51522107 ttaaagcaaacaattgagataattattaaagcaaatagtatctgaaataatgggcaca 51522164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 12 - 280
Target Start/End: Original strand, 8470017 - 8470298
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgta 110  Q
    ||||||||||||||||| |||  |||||||||||||||||| |||||  ||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  8470017 atgaatgagatttgtgatattagaagtagatatgagtccctatatatcagtacattgtgtggtggacactgacggattcgaaataagttattgtattgta 8470116  T
Q  111 ttaaaacaaacggtggggatagttattaaag---caaatagta------tgtgaaataatgggcacatattccaacgaatggagatagaccttcaaatag 201  Q
    ||||| ||||| ||||||||| |||||||||   |  ||||||      | | ||| | ||||||||   |||||| |||||||  ||||||||||||||    
T  8470117 ttaaagcaaacagtggggataattattaaagtcacggatagtaccattttattaaacagtgggcacacgctccaacaaatggaggaagaccttcaaatag 8470216  T
Q  202 tatgtgaaat--aagtcaaggataattattaaaacaaaaagt-gggactagacaacacaaacaattattaaaataaacactg 280  Q
    ||||||||||  ||||||  |||||||  |||| |||| | | |||||||||||||||  ||||||||||||  ||||||||    
T  8470217 tatgtgaaataaaagtcacagataattggtaaagcaaacattagggactagacaacactgacaattattaaagcaaacactg 8470298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 12 - 163
Target Start/End: Complemental strand, 47298864 - 47298709
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgta-ttgt 109  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| | ||||||||||||||||||||||  ||     
T  47298864 atgaatgagatttgtgaaattgaaagtagatatgagtccctatatataagtacattgtgtggtggacactgatggatttgaaataagttattgtaggtga 47298765  T
Q  110 attaa--aacaaacggtggggatagttattaaagcaaatagtatgtgaaataatgg 163  Q
    | |||    || || ||||| ||| |||||||||||||||||| ||||||||||||    
T  47298764 aataatgggcacacagtgggcataattattaaagcaaatagtaggtgaaataatgg 47298709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 2476635 - 2476527
Alignment:
Q  14 gaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgtatt 112  Q
    ||||||||||||||| |||| ||||||| |||||||||| |||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  2476635 gaatgagatttgtgatattggaagtagacatgagtccctatatataagtacattgtgtggtggacactgacggattcgaaataagttattgtattgtatt 2476536  T
Q  113 aaaacaaac 121  Q
    ||| |||||    
T  2476535 aaagcaaac 2476527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 48386445 - 48386343
Alignment:
Q  14 gaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgtatt 112  Q
    ||||||||||||||| |||| ||||||| |||||||||| |||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  48386445 gaatgagatttgtgatattggaagtagacatgagtccctatatataagtacattgtgtggtggacactaacggattcgaaataagttattgtattgtatt 48386346  T
Q  113 aaa 115  Q
    |||    
T  48386345 aaa 48386343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 48406114 - 48406218
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgta 110  Q
    ||||||||||||||||| |||| |||||||||||||||||| |||||| ||||||||||| ||||||||| ||||||| ||||||| |||||||||||||    
T  48406114 atgaatgagatttgtgatattggaagtagatatgagtccctatatataagtacattgtgtagtggacactgacggattcgaaataaattattgtattgta 48406213  T
Q  111 ttaaa 115  Q
    |||||    
T  48406214 ttaaa 48406218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 12 - 105
Target Start/End: Complemental strand, 17679612 - 17679518
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgta 105  Q
    |||||||||||||||||||||| ||||||||||||||| || |||||| ||||||||||||||||||||| ||| ||||||||||||||||||||    
T  17679612 atgaatgagatttgtgaaattggaagtagatatgagtctctatatataagtacattgtgtggtggacactgacgaatttgaaataagttattgta 17679518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 17785116 - 17785210
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgta 105  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||| |||||||  |||||||||||||||    
T  17785116 atgaatgagatttgtgaaattggaagtagatatgagtccctatatataagtacattgtgtggtggacactgacggattcaaaataagttattgta 17785210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 31469851 - 31469938
Alignment:
Q  15 aatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttat 101  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| | ||||||||||||||||||||    
T  31469851 aatgagacttgtgaaattgaaagtagatatgagtccctatatataagtacattgtgtggtggacattgacggatttgaaataagttat 31469938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 45240870 - 45240972
Alignment:
Q  14 gaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgtatt 112  Q
    ||||||||||||||| |||| ||||||| |||||||||| |||||| |||||||||||||  |||||| ||||||| |||||||||||||||||||||||    
T  45240870 gaatgagatttgtgatattggaagtagacatgagtccctatatataagtacattgtgtggacgacactaacggattcgaaataagttattgtattgtatt 45240969  T
Q  113 aaa 115  Q
    |||    
T  45240970 aaa 45240972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 38 - 166
Target Start/End: Complemental strand, 38837975 - 38837843
Alignment:
Q  38 tagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgta-ttgtattaa--aacaaacggtggggatagt 133  Q
    ||||||||||||||| |||||| ||||||||||||||||||| | || |||||||||||||||||||||  || | |||     | || ||||| ||| |    
T  38837975 tagatatgagtccctatatataagtacattgtgtggtggacagtgacagatttgaaataagttattgtaggtgaaataatgggtacacagtgggcataat 38837876  T
Q  134 tattaaagcaaatagtatgtgaaataatgggca 166  Q
    ||||||||||||||||| |||||||||||||||    
T  38837875 tattaaagcaaatagtaggtgaaataatgggca 38837843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 51522167 - 51522212
Alignment:
Q  123 gtggggatagttattaaagcaaatagtatgtgaaataatgggcaca 168  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  51522167 gtggggataattattaaagcaaatagtatgtgaaataatgggcaca 51522212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 168
Target Start/End: Complemental strand, 38837828 - 38837793
Alignment:
Q  133 ttattaaagcaaatagtatgtgaaataatgggcaca 168  Q
    |||||||||||||||||| |||||||||||||||||    
T  38837828 ttattaaagcaaatagtaggtgaaataatgggcaca 38837793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 42
Target Start/End: Original strand, 31469817 - 31469847
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagat 42  Q
    |||||||||||||||||||||||||||||||    
T  31469817 atgaatgagatttgtgaaattgaaagtagat 31469847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 47298895 - 47298861
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatga 46  Q
    |||||||||||||||||||||| ||||||||||||    
T  47298895 atgaatgagatttgtgaaattggaagtagatatga 47298861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 51521945 - 51521979
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatga 46  Q
    |||||||||||||||||||||| ||||||||||||    
T  51521945 atgaatgagatttgtgaaattggaagtagatatga 51521979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 47298701 - 47298656
Alignment:
Q  123 gtggggatagttattaaagcaaatagtatgtgaaataatgggcaca 168  Q
    ||||| ||| |||||||||||||| ||| |||||||||||||||||    
T  47298701 gtgggcataattattaaagcaaattgtaggtgaaataatgggcaca 47298656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 17785056 - 17785088
Alignment:
Q  14 gaatgagatttgtgaaattgaaagtagatatga 46  Q
    |||||||||||||||||||| ||||||||||||    
T  17785056 gaatgagatttgtgaaattggaagtagatatga 17785088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 4e-55; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 12 - 168
Target Start/End: Complemental strand, 34435841 - 34435684
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgta 110  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  34435841 atgaatgagatttgtgaaattggaagtagatatgagtccctatatataagtacattgtgtggtggacactgacggattcgaaataagttattgtattgta 34435742  T
Q  111 ttaaaacaaacggtggggatagttattaaagcaaatagtatgtgaaataatgggcaca 168  Q
    ||||| ||||| |||| |||| ||||||||||||||| ||||||||||||||| ||||    
T  34435741 ttaaagcaaacagtggagataattattaaagcaaatattatgtgaaataatggacaca 34435684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 13 - 121
Target Start/End: Complemental strand, 16173358 - 16173249
Alignment:
Q  13 tgaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgtat 111  Q
    |||||||||||||||| |||| |||||||||||||| ||| |||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  16173358 tgaatgagatttgtgatattgtaagtagatatgagtacctatatataagtacattgtgtggtggacactgacggattcgaaataagttattgtattgtat 16173259  T
Q  112 taaaacaaac 121  Q
    |||| |||||    
T  16173258 taaagcaaac 16173249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 3616760 - 3616652
Alignment:
Q  14 gaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgtatt 112  Q
    ||||||||||||||| |||| ||||||| |||||||||| |||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  3616760 gaatgagatttgtgatattggaagtagacatgagtccctatatataagtacattgtgtggtggacactgacggattcgaaataagttattgtattgtatt 3616661  T
Q  113 aaaacaaac 121  Q
    ||| |||||    
T  3616660 aaagcaaac 3616652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 8993518 - 8993626
Alignment:
Q  14 gaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgtatt 112  Q
    ||||||||||||||| |||| ||||||| |||||||||| |||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  8993518 gaatgagatttgtgatattggaagtagacatgagtccctatatataagtacattgtgtggtggacactaacggattcgaaataagttattgtattgtatt 8993617  T
Q  113 aaaacaaac 121  Q
    ||| |||||    
T  8993618 aaagcaaac 8993626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 13112296 - 13112404
Alignment:
Q  14 gaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgtatt 112  Q
    ||||||||||||||| |||| ||||||| |||||||||| |||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  13112296 gaatgagatttgtgatattggaagtagacatgagtccctatatataagtacattgtgtggtggacactaacggattcgaaataagttattgtattgtatt 13112395  T
Q  113 aaaacaaac 121  Q
    ||| |||||    
T  13112396 aaagcaaac 13112404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 37 - 168
Target Start/End: Original strand, 33605840 - 33605976
Alignment:
Q  37 gtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgtattaaaacaaacggtggggatagtta 135  Q
    |||||||||||||| | |||||| ||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||  ||| |||| |||    
T  33605840 gtagatatgagtccttatatataagtaaattgtgtggtggacactgacggattcgaaataagttattgtattgtattaaagcaaacaatggagataatta 33605939  T
Q  136 tta----aagcaaatagtatgtgaaataatgggcaca 168  Q
    |||    ||||||||||||||||||||||||||||||    
T  33605940 ttaaagcaagcaaatagtatgtgaaataatgggcaca 33605976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 46915828 - 46915741
Alignment:
Q  15 aatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttat 101  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  46915828 aatgagacttgtgaaattgaaagtagatatgagtccctatatataagtacattgtgtggtggacactgacggatttgaaataagttat 46915741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 3531646 - 3531538
Alignment:
Q  14 gaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgtatt 112  Q
    ||||||||||||||| |||| ||||||| |||||||||| |||||| |||||||||||||  |||||| ||||||| |||||||||||||||||||||||    
T  3531646 gaatgagatttgtgatattggaagtagacatgagtccctatatataagtacattgtgtggacgacactaacggattcgaaataagttattgtattgtatt 3531547  T
Q  113 aaaacaaac 121  Q
    ||| |||||    
T  3531546 aaagcaaac 3531538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 12 - 105
Target Start/End: Complemental strand, 53182681 - 53182587
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgta 105  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||| | ||||||||||||||||| | ||||||| ||||||||||||||||    
T  53182681 atgaatgagatttgtgaaattggaagtagatatgagtccctatatataagcacattgtgtggtggacattgacggattcgaaataagttattgta 53182587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 2213632 - 2213546
Alignment:
Q  15 aatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttat 101  Q
    ||||||| |||||||||||||||||||||||||||||  |||||| ||||||||||||||||||| | ||||||||||||||||||||    
T  2213632 aatgagacttgtgaaattgaaagtagatatgagtccc-atatataagtacattgtgtggtggacattgacggatttgaaataagttat 2213546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 46915893 - 46915859
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatga 46  Q
    |||||||||||||||||||||||||||||||||||    
T  46915893 atgaatgagatttgtgaaattgaaagtagatatga 46915859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 53182712 - 53182678
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatga 46  Q
    |||||||||||||||||||||||||||||||||||    
T  53182712 atgaatgagatttgtgaaattgaaagtagatatga 53182678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 53182556 - 53182519
Alignment:
Q  133 ttattaaagcaaatagtatgtgaaataatgggcacata 170  Q
    |||||||||||||||||| |||||||||||||||||||    
T  53182556 ttattaaagcaaatagtaggtgaaataatgggcacata 53182519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 42
Target Start/End: Complemental strand, 2213666 - 2213636
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagat 42  Q
    |||||||||||||||||||||||||||||||    
T  2213666 atgaatgagatttgtgaaattgaaagtagat 2213636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 168
Target Start/End: Complemental strand, 23539767 - 23539734
Alignment:
Q  135 attaaagcaaatagtatgtgaaataatgggcaca 168  Q
    |||||||||||||||| |||||||||||||||||    
T  23539767 attaaagcaaatagtaggtgaaataatgggcaca 23539734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 34435681 - 34435636
Alignment:
Q  123 gtggggatagttattaaagcaaatagtatgtgaaataatgggcaca 168  Q
    ||||| ||| |||||||||||||||||| |||||||||| ||||||    
T  34435681 gtgggcataattattaaagcaaatagtaggtgaaataataggcaca 34435636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 2e-54; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 13 - 168
Target Start/End: Complemental strand, 31186542 - 31186386
Alignment:
Q  13 tgaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgtat 111  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  31186542 tgaatgagatttgtgaaattggaagtagatatgagtccctatatataagtacattgtgtggtggacattgacggatttgaaataagttattgtattgtat 31186443  T
Q  112 taaaacaaacggtggggatagttattaaagcaaatagtatgtgaaataatgggcaca 168  Q
    |||| ||||  || | |||| ||||||||||||||||||||||||||||||||||||    
T  31186442 taaagcaaatagttgagataattattaaagcaaatagtatgtgaaataatgggcaca 31186386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 15 - 170
Target Start/End: Complemental strand, 31206255 - 31206100
Alignment:
Q  15 aatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgtatta 113  Q
    ||||||||||||||||||| ||||||||||| |||  | |||||| ||| ||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  31206255 aatgagatttgtgaaattggaagtagatatgtgtct-tatatataagtatattgtgtggtggacattgacggatttgaaataagttattgtattgtatta 31206157  T
Q  114 aaacaaacggtggggatagttattaaagcaaatagtatgtgaaataatgggcacata 170  Q
    || ||||  |||| |||| ||||||||||||||||||||||||||||||||||||||    
T  31206156 aagcaaatagtggagataattattaaagcaaatagtatgtgaaataatgggcacata 31206100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 12 - 168
Target Start/End: Complemental strand, 16442109 - 16441952
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgta 110  Q
    ||||||||||||||||| |||| ||||| |||||| ||||| |||||| ||||||||||||||||||||| ||||||| || |||||| ||||| |||||    
T  16442109 atgaatgagatttgtgatattggaagtaaatatgaatccctatatataagtacattgtgtggtggacactgacggattcgatataagtcattgtcttgta 16442010  T
Q  111 ttaaaacaaacggtggggatagttattaaagcaaatagtatgtgaaataatgggcaca 168  Q
    ||||| ||||| || |  ||| ||||||||||||| |  |||||||||||||||||||    
T  16442009 ttaaagcaaacagttgaaataattattaaagcaaacataatgtgaaataatgggcaca 16441952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 67 - 168
Target Start/End: Complemental strand, 40880061 - 40879959
Alignment:
Q  67 tgtgtggtggacacta-cggatttgaaataagttattgtattgtattaaaacaaacggtggggatagttattaaagcaaatagtatgtgaaataatgggc 165  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||| ||||| |||| |||| ||||||||||||||||||||||||||||||| |    
T  40880061 tgtgtggtggacactaacggatttgaaataaattattgtattgtattaaagcaaacagtggagataattattaaagcaaatagtatgtgaaataatggcc 40879962  T
Q  166 aca 168  Q
    |||    
T  40879961 aca 40879959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 7586840 - 7586732
Alignment:
Q  14 gaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgtatt 112  Q
    ||||||||||||||| |||| ||||||| |||||||||| |||||| |||||||||||||| |||||| ||||||| |||||||||||||||||||||||    
T  7586840 gaatgagatttgtgatattggaagtagacatgagtccctatatataagtacattgtgtggtcgacactaacggattcgaaataagttattgtattgtatt 7586741  T
Q  113 aaaacaaac 121  Q
    ||| |||||    
T  7586740 aaagcaaac 7586732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 8853781 - 8853868
Alignment:
Q  15 aatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttat 101  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| | ||||||||||||||||||||    
T  8853781 aatgagacttgtgaaattgaaagtagatatgagtccctatatataagtacattgtgtggtggacattgacggatttgaaataagttat 8853868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 12856743 - 12856830
Alignment:
Q  15 aatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttat 101  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| | ||||||||||||||||||||    
T  12856743 aatgagacttgtgaaattgaaagtagatatgagtccctatatataagtacattgtgtggtggacattgacggatttgaaataagttat 12856830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 30820920 - 30820818
Alignment:
Q  14 gaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgtatt 112  Q
    ||||||||||||||| |||| ||||||| |||||||||| |||||| |||||||||||||  |||||| ||||||| |||||||||||||||||||||||    
T  30820920 gaatgagatttgtgatattggaagtagacatgagtccctatatataagtacattgtgtggacgacactaacggattcgaaataagttattgtattgtatt 30820821  T
Q  113 aaa 115  Q
    |||    
T  30820820 aaa 30820818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 22349920 - 22349830
Alignment:
Q  14 gaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattg 103  Q
    ||||||||||||||| |||| ||||||| |||||||||| |||||| |||||||||||||  |||||| ||||||| ||||||||||||||    
T  22349920 gaatgagatttgtgatattggaagtagacatgagtccctatatataagtacattgtgtggacgacactaacggattcgaaataagttattg 22349830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 42
Target Start/End: Original strand, 8853747 - 8853777
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagat 42  Q
    |||||||||||||||||||||||||||||||    
T  8853747 atgaatgagatttgtgaaattgaaagtagat 8853777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 42
Target Start/End: Original strand, 12856709 - 12856739
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagat 42  Q
    |||||||||||||||||||||||||||||||    
T  12856709 atgaatgagatttgtgaaattgaaagtagat 12856739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 31186286 - 31186242
Alignment:
Q  243 ggactagacaacacaaacaattattaaaataaacactgagaatta 287  Q
    |||||||||||||| |||||||||||||  ||||||||| |||||    
T  31186286 ggactagacaacactaacaattattaaagcaaacactgacaatta 31186242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 5e-45; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 12 - 168
Target Start/End: Complemental strand, 32128591 - 32128430
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgta 110  Q
    |||||||||||||||||||||  |||||||||||||||||| |||||| ||| |||||| |||||||||| |||||||||||||||||||||||||||||    
T  32128591 atgaatgagatttgtgaaattagaagtagatatgagtccctatatataagtaaattgtgcggtggacactgacggatttgaaataagttattgtattgta 32128492  T
Q  111 ttaaaacaaacggtggggatagttatta----aagcaaatagtatgtgaaataatgggcaca 168  Q
    ||||| ||||  |||| |||| ||||||    ||||||||||||||||||||||||||||||    
T  32128491 ttaaagcaaaaagtggagataattattaaagcaagcaaatagtatgtgaaataatgggcaca 32128430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 12 - 168
Target Start/End: Original strand, 26813895 - 26814056
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgta 110  Q
    |||||||||||||||||| ||  |||||||||||||||||| |||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  26813895 atgaatgagatttgtgaatttagaagtagatatgagtccctatatataagtaaattgtgtggtggacactaacggatttgaaataagttattgtattgta 26813994  T
Q  111 ttaaaacaaacggtggggatagttatta----aagcaaatagtatgtgaaataatgggcaca 168  Q
    ||||| ||||  |||  |||| ||||||    ||||||||||||||||||||||||||||||    
T  26813995 ttaaagcaaaaagtgaagataattattaaagcaagcaaatagtatgtgaaataatgggcaca 26814056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 36520238 - 36520346
Alignment:
Q  14 gaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgtatt 112  Q
    ||||||||||||||| |||| ||||||| |||||||||| |||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  36520238 gaatgagatttgtgatattggaagtagacatgagtccctatatataagtacattgtgtggtggacactgacggattcgaaataagttattgtattgtatt 36520337  T
Q  113 aaaacaaac 121  Q
    ||| |||||    
T  36520338 aaagcaaac 36520346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 22658435 - 22658545
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgta 110  Q
    ||||||||||||||||| |||| |||||||||||| ||||| |||||| ||||||||||||||||||||| | ||||| |||||||||||||||||||||    
T  22658435 atgaatgagatttgtgatattggaagtagatatgaatccctatatataagtacattgtgtggtggacactgaaggattcgaaataagttattgtattgta 22658534  T
Q  111 ttaaaacaaac 121  Q
    ||||| |||||    
T  22658535 ttaaagcaaac 22658545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 22192933 - 22193020
Alignment:
Q  15 aatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttat 101  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| | ||||||||||||||||||||    
T  22192933 aatgagacttgtgaaattgaaagtagatatgagtccctatatataagtacattgtgtggtggacattgacggatttgaaataagttat 22193020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 26813833 - 26813867
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatga 46  Q
    |||||||||||||||||||||||||||||||||||    
T  26813833 atgaatgagatttgtgaaattgaaagtagatatga 26813867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 42
Target Start/End: Original strand, 22192899 - 22192929
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagat 42  Q
    |||||||||||||||||||||||||||||||    
T  22192899 atgaatgagatttgtgaaattgaaagtagat 22192929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 26813864 - 26813898
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatga 46  Q
    |||||||||||||||||||||| ||||||||||||    
T  26813864 atgaatgagatttgtgaaattggaagtagatatga 26813898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 32128622 - 32128588
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatga 46  Q
    |||||||||||||||||||||| ||||||||||||    
T  32128622 atgaatgagatttgtgaaattggaagtagatatga 32128588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 279
Target Start/End: Original strand, 22658855 - 22658974
Alignment:
Q  163 ggcacatattccaacgaatggagatagaccttcaaatagtatgtgaaat--aagtcaaggataattattaaaacaaaaagt-gggactagacaacacaaa 259  Q
    ||||||||||||||| |||||||  | ||||| ||||||| | ||||||  |||||| ||||||||  |||| |||| | | |||||||||||||||  |    
T  22658855 ggcacatattccaacaaatggaggaacacctttaaatagtgtttgaaataaaagtcagggataattggtaaagcaaacactagggactagacaacactga 22658954  T
Q  260 caattattaaaataaacact 279  Q
    ||| |||||||  |||||||    
T  22658955 caaatattaaagcaaacact 22658974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 5e-42; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 15 - 168
Target Start/End: Complemental strand, 9273587 - 9273435
Alignment:
Q  15 aatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgtatta 113  Q
    ||||||||||||||||||| ||||| |||||||||| |  ||||| |||||||||||||| |||||| ||| ||| |||| |||||||||||||||||||    
T  9273587 aatgagatttgtgaaattggaagtatatatgagtcctt--atataagtacattgtgtggttgacactgacgaattcgaaaaaagttattgtattgtatta 9273490  T
Q  114 aaacaaacggtggggatagttattaaagcaaatagtatgtgaaataatgggcaca 168  Q
    || ||||| ||||||||| ||||||||||||||||||||||||||||||| ||||    
T  9273489 aagcaaacagtggggataattattaaagcaaatagtatgtgaaataatggacaca 9273435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 27944224 - 27944332
Alignment:
Q  14 gaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgtatt 112  Q
    ||||||||||||||| |||| ||||||| |||||||||| |||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  27944224 gaatgagatttgtgatattggaagtagacatgagtccctatatataagtacattgtgtggtggacactgacggattcgaaataagttattgtattgtatt 27944323  T
Q  113 aaaacaaac 121  Q
    ||| |||||    
T  27944324 aaagcaaac 27944332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 29617914 - 29617806
Alignment:
Q  14 gaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgtatt 112  Q
    ||||||||||||||| |||| |||||||||||||||| | |||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  29617914 gaatgagatttgtgatattggaagtagatatgagtccttatatataagtacattgtgtggtggacactaacggattcgaaataagttattgtattgtatt 29617815  T
Q  113 aaaacaaac 121  Q
    ||| |||||    
T  29617814 aaagcaaac 29617806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 32974907 - 32974799
Alignment:
Q  14 gaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgtatt 112  Q
    ||||||||||||||| |||| ||||||| |||||||||| |||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  32974907 gaatgagatttgtgatattggaagtagacatgagtccctatatataagtacattgtgtggtggacactgacggattcgaaataagttattgtattgtatt 32974808  T
Q  113 aaaacaaac 121  Q
    ||| |||||    
T  32974807 aaagcaaac 32974799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 40890598 - 40890706
Alignment:
Q  14 gaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgtatt 112  Q
    ||||||||||||||| |||  ||||||| |||||||||| |||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  40890598 gaatgagatttgtgatattagaagtagacatgagtccctatatataagtacattgtgtggtggacactgacggattcgaaataagttattgtattgtatt 40890697  T
Q  113 aaaacaaac 121  Q
    ||| |||||    
T  40890698 aaagcaaac 40890706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 4578750 - 4578837
Alignment:
Q  15 aatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttat 101  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  4578750 aatgagacttgtgaaattgaaagtagatatgagtccctatatataagtacattgtgtggtggacactgacggatttgaaataagttat 4578837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 161 - 270
Target Start/End: Complemental strand, 27406439 - 27406327
Alignment:
Q  161 tgggcacatattccaacgaatggagatagaccttcaaatagtatgtgaaat--aagtcaaggataattattaaaacaaaaagt-gggactagacaacaca 257  Q
    |||||||| ||||||||||||||||  ||||||||||||||| | ||||||  |||||| ||||||||  |||| |||| | | |||||||||||||||     
T  27406439 tgggcacacattccaacgaatggaggaagaccttcaaatagtgtttgaaataaaagtcacggataattggtaaagcaaacactagggactagacaacact 27406340  T
Q  258 aacaattattaaa 270  Q
     ||||||||||||    
T  27406339 gacaattattaaa 27406327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 4578685 - 4578719
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatga 46  Q
    |||||||||||||||||||||||||||||||||||    
T  4578685 atgaatgagatttgtgaaattgaaagtagatatga 4578719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 279
Target Start/End: Complemental strand, 30646991 - 30646872
Alignment:
Q  163 ggcacatattccaacgaatggagatagaccttcaaatagtatgtgaaat--aagtcaaggataattattaaaacaaaaagt-gggactagacaacacaaa 259  Q
    |||||| ||| |||| |||||||  ||||||||||||||| | ||||||  |||||| ||||||||  |||| |||| | | |||||||||||||||  |    
T  30646991 ggcacacatttcaacaaatggaggaagaccttcaaatagtgtttgaaataaaagtcacggataattggtaaagcaaacactagggactagacaacactga 30646892  T
Q  260 caattattaaaataaacact 279  Q
    ||| |||||||  |||||||    
T  30646891 caaatattaaagcaaacact 30646872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 12 - 168
Target Start/End: Original strand, 104566 - 104727
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgta 110  Q
    |||||||||||||||||||||  |||||||||| ||||||| |||||| ||| ||||||||||||| ||| |||||||||||||||||||||||||||||    
T  104566 atgaatgagatttgtgaaattagaagtagatataagtccctatatataagtaaattgtgtggtggagactgacggatttgaaataagttattgtattgta 104665  T
Q  111 ttaaaacaaacggtggggatagttatta----aagcaaatagtatgtgaaataatgggcaca 168  Q
    ||||| ||||  |||  |||| ||||||    ||||||||||||||||||||||||||||||    
T  104666 ttaaagcaaaaagtgaagataattattaaagcaagcaaatagtatgtgaaataatgggcaca 104727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 104535 - 104569
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatga 46  Q
    |||||||||||||||||||||| ||||||||||||    
T  104535 atgaatgagatttgtgaaattggaagtagatatga 104569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 7e-35; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 12 - 170
Target Start/End: Original strand, 50018773 - 50018935
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgta-ttgt 109  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||| ||||||| ||||||||||||||||  ||     
T  50018773 atgaatgagatttgtgaaattggaagtagatatgagtccctatatataagtacattgtgtggtggacactgacggattcgaaataagttattgtaggtga 50018872  T
Q  110 attaa--aacaaacggtggggatagttattaaagcaaatagtatgtgaaataatgggcacata 170  Q
    | |||    || || ||||  ||| |||||||||||||||||| |||||||||||||||||||    
T  50018873 aataatgggcacacagtggacataattattaaagcaaatagtaggtgaaataatgggcacata 50018935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 12 - 168
Target Start/End: Complemental strand, 33189242 - 33189082
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgta-ttgt 109  Q
    |||||||||||||||||||||| |||||||||||||||| | |||||| ||||||||||||||||||| | ||||||||||||||||||||||||  ||     
T  33189242 atgaatgagatttgtgaaattggaagtagatatgagtccttatatataagtacattgtgtggtggacaatgacggatttgaaataagttattgtaggtga 33189143  T
Q  110 attaa--aacaaacggtggggatagttattaaagcaaatagtatgtgaaataatgggcaca 168  Q
    | |||    || || ||||| ||| |||||||| |||||||||||||||||||||||||||    
T  33189142 aataatgggcacacagtgggcataattattaaaacaaatagtatgtgaaataatgggcaca 33189082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 30416767 - 30416659
Alignment:
Q  14 gaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgtatt 112  Q
    ||||||||||||||| |||| ||||||| |||||||||| |||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  30416767 gaatgagatttgtgatattggaagtagacatgagtccctatatataagtacattgtgtggtggacactaacggattcgaaataagttattgtattgtatt 30416668  T
Q  113 aaaacaaac 121  Q
    ||| |||||    
T  30416667 aaagcaaac 30416659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 42562633 - 42562741
Alignment:
Q  14 gaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgtatt 112  Q
    |||||| |||||||| |||| ||||||||||||| |||| |||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  42562633 gaatgaaatttgtgatattggaagtagatatgaggccctatatataagtacattgtgtggtggacactaacggattcgaaataagttattgtattgtatt 42562732  T
Q  113 aaaacaaac 121  Q
    ||| |||||    
T  42562733 aaagcaaac 42562741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 42599831 - 42599744
Alignment:
Q  15 aatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttat 101  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  42599831 aatgagacttgtgaaattgaaagtagatatgagtccctatatataagtacattgtgtggtggacactgacggatttgaaataagttat 42599744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 6047002 - 6046894
Alignment:
Q  14 gaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgtatt 112  Q
    ||||||||||||||| |||| ||||||| |||||||||| |||||| |||||||||||||  |||||| ||||||| |||||||||||||||||||||||    
T  6047002 gaatgagatttgtgatattggaagtagacatgagtccctatatataagtacattgtgtggacgacactaacggattcgaaataagttattgtattgtatt 6046903  T
Q  113 aaaacaaac 121  Q
    ||| |||||    
T  6046902 aaagcaaac 6046894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 25789124 - 25789037
Alignment:
Q  15 aatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttat 101  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| | ||||||||||||||||||||    
T  25789124 aatgagacttgtgaaattgaaagtagatatgagtccctatatataagtacattgtgtggtggacattgacggatttgaaataagttat 25789037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 25831081 - 25830994
Alignment:
Q  15 aatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttat 101  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| | ||||||||||||||||||||    
T  25831081 aatgagacttgtgaaattgaaagtagatatgagtccctatatataagtacattgtgtggtggacattgacggatttgaaataagttat 25830994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 47145891 - 47145978
Alignment:
Q  15 aatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttat 101  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| | ||||||||||||||||||||    
T  47145891 aatgagacttgtgaaattgaaagtagatatgagtccctatatataagtacattgtgtggtggacattgacggatttgaaataagttat 47145978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 17468246 - 17468348
Alignment:
Q  14 gaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgtatt 112  Q
    ||||||||||||||| |||| ||||||| |||||||||| |||||| |||||||||||||  |||||| ||||||| |||||||||||||||||||||||    
T  17468246 gaatgagatttgtgatattggaagtagacatgagtccctatatataagtacattgtgtggacgacactaacggattcgaaataagttattgtattgtatt 17468345  T
Q  113 aaa 115  Q
    |||    
T  17468346 aaa 17468348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 51428812 - 51428906
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgta 105  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||| | ||||||||||||||||| | ||||||| ||||||||||||||||    
T  51428812 atgaatgagatttgtgaaattggaagtagatatgagtccctatatataagcacattgtgtggtggacattgacggattcgaaataagttattgta 51428906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 12 - 168
Target Start/End: Original strand, 33750433 - 33750593
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgta-ttgt 109  Q
    ||||||||||||| |||||||| |||| ||||||||||||| |||||| ||||||||||||||||||| | ||||||| ||||||||||||||||  ||     
T  33750433 atgaatgagatttctgaaattggaagtggatatgagtccctatatataagtacattgtgtggtggacaatgacggattcgaaataagttattgtaggtga 33750532  T
Q  110 attaa--aacaaacggtggggatagttattaaagcaaatagtatgtgaaataatgggcaca 168  Q
    | |||    || | |||||  ||| |||||||||||||||||| |||||||||||||||||    
T  33750533 aataatggccacatggtggacataattattaaagcaaatagtaggtgaaataatgggcaca 33750593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 10426004 - 10425896
Alignment:
Q  14 gaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtattgtatt 112  Q
    ||||||||||||||| |||| ||||||| |||||||||| |||||| |||||||||||||| |||| | ||| ||| |||||||||||||||||||||||    
T  10426004 gaatgagatttgtgatattggaagtagacatgagtccctatatataagtacattgtgtggtcgacaataacgaattcgaaataagttattgtattgtatt 10425905  T
Q  113 aaaacaaac 121  Q
    ||| |||||    
T  10425904 aaagcaaac 10425896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 42599896 - 42599862
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatga 46  Q
    |||||||||||||||||||||||||||||||||||    
T  42599896 atgaatgagatttgtgaaattgaaagtagatatga 42599862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 21230752 - 21230687
Alignment:
Q  42 tatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtat 106  Q
    ||||||||||| |||||| ||||||||  ||||||||||| || |||| |||||||||||||||||    
T  21230752 tatgagtccctatatataagtacattgaatggtggacactaacagattcgaaataagttattgtat 21230687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 168
Target Start/End: Original strand, 50018994 - 50019029
Alignment:
Q  133 ttattaaagcaaatagtatgtgaaataatgggcaca 168  Q
    ||||||||||||||||||||||||||||||| ||||    
T  50018994 ttattaaagcaaatagtatgtgaaataatggacaca 50019029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 42
Target Start/End: Complemental strand, 25789158 - 25789128
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagat 42  Q
    |||||||||||||||||||||||||||||||    
T  25789158 atgaatgagatttgtgaaattgaaagtagat 25789128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 42
Target Start/End: Complemental strand, 25831115 - 25831085
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagat 42  Q
    |||||||||||||||||||||||||||||||    
T  25831115 atgaatgagatttgtgaaattgaaagtagat 25831085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 33750371 - 33750405
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatga 46  Q
    |||||||||||||||||||||| ||||||||||||    
T  33750371 atgaatgagatttgtgaaattggaagtagatatga 33750405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 42
Target Start/End: Original strand, 47145857 - 47145887
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagat 42  Q
    |||||||||||||||||||||||||||||||    
T  47145857 atgaatgagatttgtgaaattgaaagtagat 47145887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 50018681 - 50018715
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatga 46  Q
    |||||||||||||||||||||| ||||||||||||    
T  50018681 atgaatgagatttgtgaaattggaagtagatatga 50018715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 50018742 - 50018776
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatga 46  Q
    |||||||||||||||||||||| ||||||||||||    
T  50018742 atgaatgagatttgtgaaattggaagtagatatga 50018776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 51428781 - 51428815
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatga 46  Q
    |||||||||||||||||||||| ||||||||||||    
T  51428781 atgaatgagatttgtgaaattggaagtagatatga 51428815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 21227011 - 21227076
Alignment:
Q  42 tatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtat 106  Q
    ||||||||| | |||||| |||||||  |||||| ||||| ||||||| |||||||||||||||||    
T  21227011 tatgagtccatatatataagtacattaagtggtgaacactgacggattcgaaataagttattgtat 21227076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 168
Target Start/End: Complemental strand, 26158238 - 26158209
Alignment:
Q  139 aagcaaatagtatgtgaaataatgggcaca 168  Q
    ||||||||||||||||||||||||||||||    
T  26158238 aagcaaatagtatgtgaaataatgggcaca 26158209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 33750596 - 33750633
Alignment:
Q  123 gtggggatagttattaaagcaaatagtatgtgaaataa 160  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  33750596 gtgggcataattattaaagcaaatagtatgtgaaataa 33750633  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 51428933 - 51428974
Alignment:
Q  129 atagttattaaagcaaatagtatgtgaaataatgggcacata 170  Q
    ||| |||||||||||||||||| |||||||||||| ||||||    
T  51428933 ataattattaaagcaaatagtaggtgaaataatggccacata 51428974  T

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Target: scaffold1240 (Bit Score: 71; Significance: 7e-32; HSPs: 2)
Name: scaffold1240
Description:

Target: scaffold1240; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 12 - 105
Target Start/End: Complemental strand, 1026 - 932
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgta 105  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  1026 atgaatgagatttgtgaaattgaaagtagatatgagtccctatatataagtacattgtgtcgtggacactgacggattcgaaataagttattgta 932  T

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Target: scaffold1240; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 1088 - 1054
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatga 46  Q
    |||||||||||||||||||||||||||||||||||    
T  1088 atgaatgagatttgtgaaattgaaagtagatatga 1054  T

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Target: chr8 (Bit Score: 71; Significance: 7e-32; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 12 - 168
Target Start/End: Complemental strand, 30530927 - 30530782
Alignment:
Q  12 atgaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacactacggatttgaaataagttattgtattgtat 111  Q
    |||||||| ||||||||||||| |||||||||||||||||| |||||| |||||||||            ||||||| |||||||||||||||| |||||    
T  30530927 atgaatgaaatttgtgaaattggaagtagatatgagtccctatatataagtacattgta-----------acggattcgaaataagttattgtactgtat 30530839  T
Q  112 taaaacaaacggtggggatagttattaaagcaaatagtatgtgaaataatgggcaca 168  Q
    |||| ||||| |||| |||| |||||||| |||||||||||||||||||||||||||    
T  30530838 taaagcaaaccgtggagataattattaaaacaaatagtatgtgaaataatgggcaca 30530782  T

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Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 1956591 - 1956483
Alignment:
Q  14 gaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacac-tacggatttgaaataagttattgtattgtatt 112  Q
    ||||||||||||||| |||| ||||||| |||||||||| |||||| ||||||||||||||||||||  ||||||| |||||||||||||||||||||||    
T  1956591 gaatgagatttgtgatattggaagtagacatgagtccctatatataagtacattgtgtggtggacacggacggattcgaaataagttattgtattgtatt 1956492  T
Q  113 aaaacaaac 121  Q
    ||| |||||    
T  1956491 aaagcaaac 1956483  T

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Target: chr8; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 17743411 - 17743504
Alignment:
Q  15 aatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacact-acggatttgaaataagttattgtatt 107  Q
    ||||||||||||||||||| ||||||||||| |||||| |||||| ||||||||||||||||||| | ||||||||||||||||||||||||||    
T  17743411 aatgagatttgtgaaattggaagtagatatgtgtccctatatataagtacattgtgtggtggacattgacggatttgaaataagttattgtatt 17743504  T

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Target: chr8; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 15055365 - 15055456
Alignment:
Q  14 gaatgagatttgtgaaattgaaagtagatatgagtccctgtatataggtacattgtgtggtggacacta-cggatttgaaataagttattgt 104  Q
    ||||||||||||||| |||| || ||||||||||||||| |||||| |||||||||||||||||||||| |||||| |||||||||||||||    
T  15055365 gaatgagatttgtgatattggaaatagatatgagtccctatatataagtacattgtgtggtggacactatcggattcgaaataagttattgt 15055456  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 30530779 - 30530738
Alignment:
Q  123 gtggggatagttattaaagcaaatagtatgtgaaataatggg 164  Q
    ||||| ||| ||||||||||||||||||||||||||||||||    
T  30530779 gtgggcataattattaaagcaaatagtatgtgaaataatggg 30530738  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 17743501 - 17743537
Alignment:
Q  134 tattaaagcaaatagtatgtgaaataatgggcacata 170  Q
    |||||||||||||| ||||||||||||||||||||||    
T  17743501 tattaaagcaaataatatgtgaaataatgggcacata 17743537  T

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Target: scaffold0658 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 65 - 168
Target Start/End: Complemental strand, 7331 - 7228
Alignment:
Q  65 attgtgtggtggacact-acggatttgaaataagttattgtattgtattaaaacaaacggtggggatagttattaaagcaaatagtatgtgaaataatgg 163  Q
    ||||||| ||||||||| | | ||| |||||||||| ||||||||||||||| |||||  |||| ||| |||||||||||||||||||||||||||||||    
T  7331 attgtgtagtggacactgatgaattcgaaataagttgttgtattgtattaaagcaaacattggg-ataattattaaagcaaatagtatgtgaaataatgg 7233  T
Q  164 gcaca 168  Q
     ||||    
T  7232 acaca 7228  T

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Target: scaffold0658; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 7365 - 7332
Alignment:
Q  15 aatgagatttgtgaaattgaaagtagatatgagt 48  Q
    ||||||||||||||||||||||||||||||||||    
T  7365 aatgagatttgtgaaattgaaagtagatatgagt 7332  T

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Target: scaffold0658; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 7220 - 7188
Alignment:
Q  128 gatagttattaaagcaaatagtatgtgaaataa 160  Q
    |||| ||||||||||||||||||||||||||||    
T  7220 gataattattaaagcaaatagtatgtgaaataa 7188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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