View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14092_low_3 (Length: 507)
Name: NF14092_low_3
Description: NF14092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14092_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Complemental strand, 40633528 - 40633043
Alignment:
| Q |
1 |
ttattggtcgcatttatttatattttctcgccaaaatcatgggatgaaaaagtacaaaacaaagcaagactattttatacctgcagtgaactcgaaaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40633528 |
ttattggtcgcatttatttatattttctcgccaaaatcatgggatgaaaaagtacaaaacaa-----gactattttatacctgcagtgaactcgaaaacc |
40633434 |
T |
|
| Q |
101 |
actacgacagtcatgacagcccaaatagcactttggccaatccctttaaagagtggctccaatatataaagcaatgatacaagagtaagagataaaccaa |
200 |
Q |
| |
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|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40633433 |
accacgacagtcatgacagcccaaatagcattttggccaatccctttaaagagtggctccaatatataaagcaatgatacaagagtaagagataaaccaa |
40633334 |
T |
|
| Q |
201 |
ctttgaatgcatggatcacccttcttggatcatcacatcccaccttccaagtagtcttccaaaccaaacaaggaaaccttttaagcctctcaccaaaaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40633333 |
ctttgaatgcatggatcacccttcttggatcatcacatcccaccttccaagtagtcttccaaaccaaacaaggaaaccttttaagcctctcaccaaaaac |
40633234 |
T |
|
| Q |
301 |
atgcatacgtttcttccatttctcaaggctttcgccactctcattcctagccatagccatttcaaggccatcatgaactttaggaatcatttcttataaa |
400 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40633233 |
atgcatacgtttcttccatttctcaaggttttcgccactctcattcctagccatagccatttcaaggccatcatgaactttaggaatcatttctaataaa |
40633134 |
T |
|
| Q |
401 |
aaggctaggtcttattagactgataatagtgtaagtagcaaagaannnnnnnnnnnnaaaatggtgatttctagatgtatgatgctgagaa |
491 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40633133 |
aaggctaggtcttattagactgataatagtgtaagtagcaaagaatttttttaaaaaaaaatggtgatttctagatgtatgatgctgagaa |
40633043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 76 - 442
Target Start/End: Complemental strand, 40645072 - 40644706
Alignment:
| Q |
76 |
tatacctgcagtgaactcgaaaaccactacgacagtcatgacagcccaaatagcactttggccaatccctttaaagagtggctccaatatataaagcaat |
175 |
Q |
| |
|
||||||||| ||||| ||||| ||||| ||||| ||||||||||||||||||||| | | |||||| |||||||||||||||||||||| | | | ||| |
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| T |
40645072 |
tatacctgcggtgaattcgaacaccacgacgacggtcatgacagcccaaatagcattctcgccaattcctttaaagagtggctccaatagaaataataat |
40644973 |
T |
|
| Q |
176 |
gatacaagagtaagagataaaccaactttgaatgcatggatcacccttcttggatcatcacatcccaccttccaagtagtcttccaaaccaaacaaggaa |
275 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||| | ||||| |||| |
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| T |
40644972 |
gatacaagagtgagagataaaccaactttgaatgcatggatcacccttcttgggtcatcatatcccaccttccatgtagtcttccaagctaaacacggaa |
40644873 |
T |
|
| Q |
276 |
accttttaagcctctcaccaaaaacatgcatacgtttcttccatttctcaaggctttcgccactctcattcctagccatagccatttcaaggccatcatg |
375 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40644872 |
accttttaagcctttcaccaaaaacatgcatacgtttcttccatttctcaaggttttcgccactctcattcctagccatagccatttcaaggccatcatg |
40644773 |
T |
|
| Q |
376 |
aactttaggaatcatttcttataaaaaggctaggtcttattagactgataatagtgtaagtagcaaa |
442 |
Q |
| |
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|||||| ||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||| |
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| T |
40644772 |
aactttcggaatcatttcttataaaaaggccagatcttattatactgataatagtgtaagtagcaaa |
40644706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 107 - 305
Target Start/End: Original strand, 4782833 - 4783031
Alignment:
| Q |
107 |
acagtcatgacagcccaaatagcactttggccaatccctttaaagagtggctccaatatataaagcaatgatacaagagtaagagataaaccaactttga |
206 |
Q |
| |
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|||||||||||||||||||| |||||||| |||||| | | | |||||||||| | ||| | || || | | ||| ||||| ||||||||||||| |
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| T |
4782833 |
acagtcatgacagcccaaattgcactttgcccaatctcatggtaaagtggctccaccaaatacaacagagaagctaaagtgagagacaaaccaactttga |
4782932 |
T |
|
| Q |
207 |
atgcatggatcacccttcttggatcatcacatcccaccttccaagtagtcttccaaaccaaacaaggaaaccttttaagcctctcaccaaaaacatgca |
305 |
Q |
| |
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|||||||||| |||||||| ||||| ||| |||| || ||||| |||||||||||| |||||| ||||| || | |||||||||||||||||||||| |
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| T |
4782933 |
atgcatggataacccttctaggatcttcatatccaacattccatgtagtcttccaagccaaactaggaactctccttagcctctcaccaaaaacatgca |
4783031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 77 - 234
Target Start/End: Complemental strand, 51850336 - 51850179
Alignment:
| Q |
77 |
atacctgcagtgaactcgaaaaccactacgacagtcatgacagcccaaatagcactttggccaatccctttaaagagtggctccaatatataaagcaatg |
176 |
Q |
| |
|
||||||||||||||||| | ||||| || ||||||||||||||||| |||||| ||| || |||||||| || | |||||||| || ||| | ||| | |
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| T |
51850336 |
atacctgcagtgaactccatgaccacaaccacagtcatgacagcccacatagcattttcccctatccctttgaacaatggctccattagatacaacaaag |
51850237 |
T |
|
| Q |
177 |
atacaagagtaagagataaaccaactttgaatgcatggatcacccttcttggatcatc |
234 |
Q |
| |
|
||||||| || | || | ||||||||| || | ||||| |||||||||||||||||| |
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|
| T |
51850236 |
atacaagtgtcaaagcaagaccaactttcaaagaatggaccacccttcttggatcatc |
51850179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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