View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14092_low_4 (Length: 486)
Name: NF14092_low_4
Description: NF14092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14092_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 7e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 292 - 473
Target Start/End: Complemental strand, 36364958 - 36364779
Alignment:
| Q |
292 |
gttggtgtgtgaataagagtcttacattgaaaaattggatgctaaacaatagtttgagagcccatagtttgattaaatctgaacaacttcttgtattgaa |
391 |
Q |
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| T |
36364958 |
gttggtgtgtgaataagagtcttatattgaaaaattggatgctaaacaatagtttgagagcccatagtttgattaaatctgaacaacttcttgtattgaa |
36364859 |
T |
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| Q |
392 |
agtcgaattgacaattatggtttgaaacgtgacatgttgatgtacacgtgagcaatgacaatacacaagtgtgtggaatgtg |
473 |
Q |
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| T |
36364858 |
agtctaattgacaattatggtttgaaacgtgacatgttgatgt--acgtgagcaatgacaatacacaagtgtgtggaatgtg |
36364779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 50 - 229
Target Start/End: Complemental strand, 36365159 - 36364979
Alignment:
| Q |
50 |
aactttcaatgtaaataatgatgtgtcagaactataatatccttgtgttctcannnnnnnatcatcgatcacttatatcatactagtacttgcaattgtc |
149 |
Q |
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| T |
36365159 |
aactttcaatgtaaataatgatgtgtcagaactataatatccttgtgttctcatttttt-atcatcgatcacttatatcatactagtacttgcaattgtc |
36365061 |
T |
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| Q |
150 |
ttacataaaggtaatatcagaaagatga--gtaataggtgctttattgaaattctaatattaatatgacactatgcttcttc |
229 |
Q |
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| T |
36365060 |
ttacataaaggtaatatcagaaagatgatcgtaataggtgctttattgaaattctaatattaatatgacgctatgcttcttc |
36364979 |
T |
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