View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14092_low_7 (Length: 358)
Name: NF14092_low_7
Description: NF14092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14092_low_7 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 23 - 358
Target Start/End: Original strand, 50324293 - 50324632
Alignment:
| Q |
23 |
ataagtttagtatattccaaagctgaaaaacaatcttgttagtattagtgagttaaaagaaaaggagttaacaattgtttttcaacatgatgaatgaagg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50324293 |
ataagtttagtatattccaaagctgaaaaacaatcttgttagtattagtgagttaaaagaaaaggagttaacaattgtttttcaacatgatgaatgaagg |
50324392 |
T |
|
| Q |
123 |
tgtatatggacagaaaagttcatttttgcagtaaaagtgacct-acaacgatgtttgctatcatcccaaatgtgac---agcatcttatttcaagccatc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| || | |||||| |||||||||||| |
|
|
| T |
50324393 |
tgtatatggacagaaaagttcatttttgcagtaaaagtgtcctaacaacgatgtttgctatcatcccaaatgaaacactaccatcttgtttcaagccatc |
50324492 |
T |
|
| Q |
219 |
aaataaagacacagcacatatgtggcaatgcagctatggacattcaagtcgaaagggcttccgagtttgaatgataacacaagaatttgtggttacttga |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50324493 |
aaataaagacacagcacatatgtggcaatgcagctatggacattcaagtcgaaagggcttccgagtttgaatgataacacaagaatttgtggttacttga |
50324592 |
T |
|
| Q |
319 |
tgaggagaaggcaacatagagaagtagagaaccattccca |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50324593 |
tgaggagaaggcaacatagagaagtagagaaccattccca |
50324632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University