View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14093_high_1 (Length: 490)
Name: NF14093_high_1
Description: NF14093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14093_high_1 |
 | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
| [»] scaffold2156 (1 HSPs) |
| | |
|
| [»] scaffold0648 (1 HSPs) |
| | |
|
| [»] scaffold0274 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 38)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 18 - 466
Target Start/End: Original strand, 17941257 - 17941702
Alignment:
| Q |
18 |
ataataaatttgatgtgataagaattccatccattcaacacaacatcacacattcctctaaacttgtccaccttaacttatcctccttcaattttgataa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17941257 |
ataataaatttgatgtgataagaattccatccattcaacacaacatcacacattcctctaaacttgtccaccttaacttatcctccttcaattttgataa |
17941356 |
T |
|
| Q |
118 |
tactcttcacatggataatcttcattggctttctccattttctaccttgaaatatctccgccttagtggcattgatcttcatgaggaaactaattggctt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17941357 |
tactcttcacatggataatcttcattggctttctccattttctaccttgaaatatctccgccttagtggcattgatcttcatgaggaaactaattggctt |
17941456 |
T |
|
| Q |
218 |
caagcagtgaatacacttccttcactattagagttacgattaacaagttgtaacctgaataacttcccatctgttgaatatttgaatttgtcttcacttg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17941457 |
caagcagtgaatacacttccttcactattagagttacgattaaaaagttgtaacctgaacaacttcccatctgttgaatatttgaatttgtcttcacttg |
17941556 |
T |
|
| Q |
318 |
taactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| | |||||| |
|
|
| T |
17941557 |
taactctttctctttctagaaacaatttcacctcttatatacctgatgggttttttaatctcaccaaaaatctcacttatctttaccttcgggggagcaa |
17941656 |
T |
|
| Q |
418 |
tatacatggtgagataccttcaagcttgctaaaccttcaaaatttgaga |
466 |
Q |
| |
|
|||| | ||| |||||||||||||| ||||||||||| || |||||| |
|
|
| T |
17941657 |
tatata---tgatataccttcaagcttactaaaccttcagaaattgaga |
17941702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 24 - 478
Target Start/End: Original strand, 19461051 - 19461511
Alignment:
| Q |
24 |
aatttgatgtgataagaattccatccattcaacacaacatcacacattcctctaaacttgtccaccttaacttatcctccttcaattttgataata---- |
119 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||| || ||||| |||||||| ||||| || | || || |
|
|
| T |
19461051 |
aatttgatgtgataagatttccatccattcaacacaacatcacacattcatctaaccttttctaccttgacttatcccccttccgttatcatgatcacgg |
19461150 |
T |
|
| Q |
120 |
--ctcttcacatggataatcttcattggctttctccattttctaccttgaaatatctccgccttagtggcattgatcttcatgaggaaactaattggctt |
217 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||| |||||||||||||| ||||||||| ||| |||||||| ||||||| ||||||||| |
|
|
| T |
19461151 |
tcctcttcacatggataatcttggttggctttctccacattcttccttgaaatatctcgaccttagtggaattcatcttcataaggaaaccaattggctt |
19461250 |
T |
|
| Q |
218 |
caagcagtgaatacacttccttcactattagagttacgattaacaagttgtaacctgaataacttcccatctgttgaatatttgaatttgtcttcacttg |
317 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |||| || | |||||||||||| || |||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
19461251 |
caaatagtgaatacacttccttcactattagaattacagttgagtcattgtaacctgaacaatttcccatctgttgagtatttgaatttgtctttacttg |
19461350 |
T |
|
| Q |
318 |
taactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaagatctcacttatcttgacc-ttcacgagagca |
416 |
Q |
| |
|
|||||||| ||||||| ||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| | |
|
|
| T |
19461351 |
taactcttgatctttctttaaacaatttcacctctcatttacctgatgggttttttaatctcaccaaagatctcacttatcttgacctttcac-agagta |
19461449 |
T |
|
| Q |
417 |
atatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc |
478 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
19461450 |
atatatacggtgagataccttcaagcttgctaaaccttcaaaatttgagagacctttatctc |
19461511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 26 - 478
Target Start/End: Original strand, 18115486 - 18115944
Alignment:
| Q |
26 |
tttgatgtgataagaattccatccattcaacacaacatcacacattcctctaaacttgtccaccttaacttatcctccttcaattttgataata------ |
119 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||||||||| ||||| ||| |||||||| |||||||| ||||| || | || || |
|
|
| T |
18115486 |
tttgatgtgataagatttccatccattcaacacaacctcacacattcatctaaccttttccaccttgacttatcccccttccgttatcatgatcacggtc |
18115585 |
T |
|
| Q |
120 |
ctcttcacatggataatcttcattggctttctccattttctaccttgaaatatctccgccttagtggcattgatcttcatgaggaaactaattggcttca |
219 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||| |||||||||||||| ||||||||| ||| |||||||| ||||||| ||||||||||| |
|
|
| T |
18115586 |
ctcttcacatggataatcttggttggctttctccacattcttccttgaaatatctcgaccttagtggaattcatcttcataaggaaaccaattggcttca |
18115685 |
T |
|
| Q |
220 |
agcagtgaatacacttccttcactattagagttacgattaacaagttgtaacctgaataacttcccatctgttgaatatttgaatttgtcttcacttgta |
319 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||| || | |||||||||||| ||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
18115686 |
aatagtgaatacacttccttcactattagaattacagttgagtcattgtaacctgaacaacttcccatctgttgagtatttgaatttgtctttacttgta |
18115785 |
T |
|
| Q |
320 |
actctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaagatctcacttatcttgacc-ttcacgagagcaat |
418 |
Q |
| |
|
|||||| ||||||| |||||| |||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||| ||| |
|
|
| T |
18115786 |
actcttgatctttctttaaacaacttcacctctcatttacctgatgggttttttaatcttaccaaagatctcacttatcttgacctttcac-agagtaat |
18115884 |
T |
|
| Q |
419 |
atacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc |
478 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
18115885 |
atatatggtgagataccttcaagcttgctaaaccttcaaaatttgagagacctttatctc |
18115944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 24 - 478
Target Start/End: Original strand, 18015625 - 18016073
Alignment:
| Q |
24 |
aatttgatgtgataagaattccatccattcaacacaacatcacacattcctctaaacttgtccaccttaacttatcctccttcaattttgataatactct |
123 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||| || ||||| ||||| | || || |||| ||||| |
|
|
| T |
18015625 |
aatttgatgtgataagtattccatccattcaaaacaacatcacacattcctctaaccttttctaccttgacttacacccccccactttt------actct |
18015718 |
T |
|
| Q |
124 |
tcacatggataatcttcattggctttctccattttctaccttgaaatatctccgccttagtggcattgatcttcatgaggaaactaattggcttcaagca |
223 |
Q |
| |
|
||||||||||||||| |||||||||| ||| ||| | |||||||||||| ||||||| | |||||||||||| ||||||| |||||||||||| | |
|
|
| T |
18015719 |
tcacatggataatctggattggctttcaccacattcgtcgttgaaatatctcaaccttagttggattgatcttcataaggaaaccaattggcttcaaata |
18015818 |
T |
|
| Q |
224 |
gtgaatacacttccttcactattagagttacgattaacaagttgtaacctgaataacttcccatctgttgaatatttgaatttgtcttcacttgtaactc |
323 |
Q |
| |
|
|||||| ||||||||||||||||||| ||| || | | || |||||||| ||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
18015819 |
gtgaattcacttccttcactattagaattagagttgagtgggtgcaacctgaacaacttcccatctgttgagtatttgaatttgccttcacttgtaactc |
18015918 |
T |
|
| Q |
324 |
tttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatataca |
423 |
Q |
| |
|
||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||| | ||||||||||| |
|
|
| T |
18015919 |
tttctctttctttcaacaacttcacctctcatatacctgatgggttttttaatctcaccaaagatctcacctctcttgacctttcatatagcaatataca |
18016018 |
T |
|
| Q |
424 |
tggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc |
478 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
18016019 |
tggtgagataccttctagcttgctaaaccttcaaaatttgagacaacttcatctc |
18016073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 132 - 477
Target Start/End: Original strand, 19413817 - 19414162
Alignment:
| Q |
132 |
ataatcttcattggctttctccattttctaccttgaaatatctccgccttagtggcattgatcttcatgaggaaactaattggcttcaagcagtgaatac |
231 |
Q |
| |
|
|||||||||||||||||| |||| ||||| | |||||||||||| ||||||| | |||||||||||| ||||||| ||||||| |||| ||||||||| |
|
|
| T |
19413817 |
ataatcttcattggctttatccactttcttcgttgaaatatctcacccttagttggattgatcttcataaggaaaccaattggcctcaaatagtgaatac |
19413916 |
T |
|
| Q |
232 |
acttccttcactattagagttac-gattaacaagttgtaacctgaataacttcccatctgttgaatatttgaatttgtcttcacttgtaactctttctct |
330 |
Q |
| |
|
|||||||||||||||||| |||| ||| | | ||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||| |
|
|
| T |
19413917 |
acttccttcactattagaattacagatgagtca-ttgtaacctaaataacttcccatctgttgagcatttgaatttgtcttcaattgtaactcttgatct |
19414015 |
T |
|
| Q |
331 |
ttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatatacatggtgag |
430 |
Q |
| |
|
|||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||| | |||||||||||||||||| |
|
|
| T |
19414016 |
ttcttacaacaacttcacctctcatatacctgatgggttttttaatctcaccaaagatctcacctctcttgacctttcatatagcaatatacatggtgag |
19414115 |
T |
|
| Q |
431 |
ataccttcaagcttgctaaaccttcaaaatttgagacaccttcatct |
477 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19414116 |
ataccttcaagcttgctaaaccttcaaaatttgagacaccttgatct |
19414162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 285 - 478
Target Start/End: Original strand, 17941740 - 17941933
Alignment:
| Q |
285 |
catctgttgaatatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa |
384 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17941740 |
catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaatttcacctctcatatacctgatgggttttttaatctcaccaa |
17941839 |
T |
|
| Q |
385 |
agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
17941840 |
agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacacctttatctc |
17941933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 24 - 478
Target Start/End: Original strand, 19399239 - 19399687
Alignment:
| Q |
24 |
aatttgatgtgataagaattccatccattcaacacaacatcacacattcctctaaacttgtccaccttaacttatcctccttcaattttgataatactct |
123 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || || |||| ||||| || | || | ||||| |
|
|
| T |
19399239 |
aatttcatgtgataagaattccatccattcaacacaatatcacacattcatctaaacttgtagactttgactt---ctcctggaact---atcagactct |
19399332 |
T |
|
| Q |
124 |
tcacatggataatcttcattggctttctccattttctaccttgaaatatctccgccttagtggcattgatcttcatgaggaaactaattggcttcaagca |
223 |
Q |
| |
|
|| |||||||||||| |||||||||||||| ||||| |||| ||||||||| ||||| | | |||||||||||| ||||||| || ||| |||||| | |
|
|
| T |
19399333 |
gcaaatggataatcttgattggctttctccactttcttccttaaaatatctcaaccttaattggattgatcttcataaggaaaccaactggtttcaagta |
19399432 |
T |
|
| Q |
224 |
gtgaatacacttccttcactattagagttacgattaacaagttgtaacctgaataacttcccatctgttgaatatttgaatttgtcttcacttgtaactc |
323 |
Q |
| |
|
|| | ||||||||| ||| | || || |||| || | ||||||||||| ||||| |||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
19399433 |
gtaagtacacttccgtcattgtttgaattacagttgagtgcatgtaacctgaacaactttccatctcttgagtatttgaatttgtcttcacttgtaactc |
19399532 |
T |
|
| Q |
324 |
tttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatataca |
423 |
Q |
| |
|
|| |||||| | ||||| |||||| | ||||||||||||||||||||||| |||||||||||||||| | |||| ||||| || | | ||||||| | |
|
|
| T |
19399533 |
ttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcaccaaagatctcacctgtctttaccttgacaataacaatatata |
19399632 |
T |
|
| Q |
424 |
tggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc |
478 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||||| ||||| |
|
|
| T |
19399633 |
tggtgagataccttcaagcttgctaacccttcaaaatttgaaacaccttgatctc |
19399687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 20 - 477
Target Start/End: Original strand, 19380420 - 19380871
Alignment:
| Q |
20 |
aataaatttgatgtgataagaattccatccattcaacacaacatcacacattcctctaaacttgtccaccttaacttatcctccttcaattttgataata |
119 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||| |||||||| |||| ||| | |||||| |||||||| ||| || | | | |
|
|
| T |
19380420 |
aataattttgatgtgataagaattccatccattcaacaaaacattacacattcatctatccttttgcaccttgacttatcccactt--atatgg----tc |
19380513 |
T |
|
| Q |
120 |
ctcttcacatggataatcttcattggctttctccattttctaccttgaaatatctccgccttagtggcattgatcttcatgaggaaactaattggcttca |
219 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||| ||||| |||| ||||||||| ||| ||| ||| |||||||| |||||| ||||||| |||| |
|
|
| T |
19380514 |
ctctgcacatggataatcttgattggctttctccactttcttccttaaaatatctcaacctcgatggaatttatcttcataaggaaaataattggtttca |
19380613 |
T |
|
| Q |
220 |
agcagtgaatacacttccttcactattagagttacgattaacaagttgtaacctgaataacttcccatctgttgaatatttgaatttgtcttcacttgta |
319 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |||| || | |||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19380614 |
agtagtgaatacacttccttcactattagaattacagttgagtcattgtaacctgaacaacttcccatctgttgagtatttgaatttgtcttcacttgta |
19380713 |
T |
|
| Q |
320 |
actctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaata |
419 |
Q |
| |
|
||||| ||||||| ||||||| |||||||| | |||| |||||||| ||||||||||| |||||| ||| | |||| || | | ||||||| |
|
|
| T |
19380714 |
actctccatctttctggaaacaacttcacctctcacttaccagatgggttgtttaatctcacgaaagatatcaactctcttagatttgagggtagcaata |
19380813 |
T |
|
| Q |
420 |
tacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatct |
477 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||||||||||| || |||| |||| |
|
|
| T |
19380814 |
tatatggtgagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatct |
19380871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 26 - 478
Target Start/End: Original strand, 18102963 - 18103397
Alignment:
| Q |
26 |
tttgatgtgataagaattccatccattcaacacaacatcacacattcctctaaacttgtccaccttaacttatcctccttcaattttgataatactcttc |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||| |||| ||| | || || ||| | |
|
|
| T |
18102963 |
tttgatgtgataagaattccatccattcaacacaacatcacacattcatctaaacttgtctaccttgactta---tcctacaact---atcctattctgc |
18103056 |
T |
|
| Q |
126 |
acatggataatcttcattggctttctccattttctaccttgaaatatctccgccttagtggcattgatcttcatgaggaaactaattggcttcaagcagt |
225 |
Q |
| |
|
||||||||| |||||| |||||||||||| ||||| |||| ||||||||| ||||||| | |||||||||||| ||||||| || ||| |||||| ||| |
|
|
| T |
18103057 |
acatggatagtcttcactggctttctccactttcttccttaaaatatctcaaccttagttggattgatcttcataaggaaaccaactggtttcaagtagt |
18103156 |
T |
|
| Q |
226 |
gaatacacttccttcactattagagttacgattaacaagttgtaacctgaataacttcccatctgttgaatatttgaatttgtcttcacttgtaactctt |
325 |
Q |
| |
|
| ||||||||||||| | ||||| |||| || | |||||||||||| ||||||||||| ||||| ||||||||||||| |||| ||||||| ||| |
|
|
| T |
18103157 |
aagtacacttccttcattgttagaattacagttgagttattgtaacctgaacaacttcccatcagttgagtatttgaatttgtattcaattgtaaccctt |
18103256 |
T |
|
| Q |
326 |
tctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatatacatg |
425 |
Q |
| |
|
|||||| ||||||| |||| | | || ||| |||||||||||||||||||||| |||||| |||||| ||| | ||||||| ||| |
|
|
| T |
18103257 |
gatctttcagaaaacaatttcacttttcatttacatgatgggttttttaatctcacc------------tatcttcaccttcgcgataacaatatatatg |
18103344 |
T |
|
| Q |
426 |
gtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc |
478 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18103345 |
gtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctc |
18103397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 26 - 479
Target Start/End: Original strand, 19350930 - 19351374
Alignment:
| Q |
26 |
tttgatgtgataagaattccatccattcaacacaacatcacacattcctctaaacttgtccaccttaacttatcctccttcaattttgataatactcttc |
125 |
Q |
| |
|
||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||| ||||| ||||||||| | | || | |||| | |
|
|
| T |
19350930 |
tttgatgtgataactattccatccattcaaaaaaacatcacacattcctctaaacttgtctaccttgacttatcctacagc---ttagttaatgat---- |
19351022 |
T |
|
| Q |
126 |
acatggataatcttcattggctttctccattttctaccttgaaatatctccgccttagtggcattgatcttcatgaggaaactaattggcttcaagcagt |
225 |
Q |
| |
|
||| |||||||| |||||||||||||| ||||| || | ||||||||| ||| |||| |||||||||||| ||||||| |||||||||||| ||| |
|
|
| T |
19351023 |
--atgaataatcttgattggctttctccactttcttccataaaatatctcaacctcggtggaattgatcttcataaggaaaccaattggcttcaaatagt |
19351120 |
T |
|
| Q |
226 |
gaatacacttccttcactattagagttacgattaacaagttgtaacctgaataacttcccatctgttgaatatttgaatttgtcttcacttgtaactctt |
325 |
Q |
| |
|
|||| ||||||||||||| ||| | |||| || ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
19351121 |
gaattcacttccttcactgttaaaattacagttgggtgaatgtaacctgaacaacttcccatctgttgagtatttgaatttgtcttcacttgtaactctt |
19351220 |
T |
|
| Q |
326 |
tctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaagatctcacttatcttgacc-ttcacgagagcaatatacat |
424 |
Q |
| |
|
||||| | |||| || ||| || | || |||| ||||||||||||||||||||||||||||||||||||||| ||| ||||| | || |||||| || |
|
|
| T |
19351221 |
gatctttttcgaaataacttcaactttaatttaccagatgggttttttaatctcaccaaagatctcacttatcttcacctttcac-aaagtaatatatat |
19351319 |
T |
|
| Q |
425 |
ggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctca |
479 |
Q |
| |
|
||| |||||||||||||||| |||||||||||||| ||||||||||| |||||| |
|
|
| T |
19351320 |
ggtaagataccttcaagcttactaaaccttcaaaaactgagacaccttgatctca |
19351374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 26 - 478
Target Start/End: Complemental strand, 14896869 - 14896411
Alignment:
| Q |
26 |
tttgatgtgataagaattccatccattcaacacaacatcacacattcctctaaacttgtccaccttaacttatcctccttcaattttgataatactcttc |
125 |
Q |
| |
|
|||||||||||||| |||||| || ||||||||||||||||||||| |||| ||| || ||||| ||||||||| |||| | | || ||| | |
|
|
| T |
14896869 |
tttgatgtgataagtattccagtcactcaacacaacatcacacattcatctagccttttctaccttgacttatcct---tcaacgaaggtcctaatctgc |
14896773 |
T |
|
| Q |
126 |
acatggataatcttcattggctttctccattttctaccttgaaatatctccgccttagtggcattgatcttcatgaggaaactaattggcttcaagcagt |
225 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||| |||||||||||||| ||||||||| ||||||||||| ||||| | ||||||||||||| ||| |
|
|
| T |
14896772 |
acatggataatcttgattggctttctccacattcttccttgaaatatctcatccttagtggaattgatcttcacaaggaatccaattggcttcaagtagt |
14896673 |
T |
|
| Q |
226 |
gaatacacttccttcactattagagttacgattaacaagttgtaacctgaataacttcc---------catctgttgaatatttgaatttgtcttcactt |
316 |
Q |
| |
|
|| ||||||||| ||||||||||| ||| ||| || ||| || ||||| |||||| ||||| |||| |||||||||||||||||| || |
|
|
| T |
14896672 |
gagtacacttccctcactattagaactacaattgactgattgcaaactgaacaacttcatgttcaactcatcttttgagtatttgaatttgtcttcaatt |
14896573 |
T |
|
| Q |
317 |
gtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaagatctcacttatcttgaccttcacgagagca |
416 |
Q |
| |
|
|||| |||| ||||||| |||||| |||||||| || | || ||||||||||||||||||| ||| ||||||| |||||| ||||||| || |||| |
|
|
| T |
14896572 |
gtaattcttaatctttctttaaacaacttcacctctcatttgccaaatgggttttttaatctcacaaaaaatctcacctatctttaccttcatgaaagca |
14896473 |
T |
|
| Q |
417 |
atatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||| |
|
|
| T |
14896472 |
atatacatggtgagataccttcaagcttgctaaaccttcaaattttaagacaccttgatctc |
14896411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 119 - 478
Target Start/End: Original strand, 19333629 - 19333988
Alignment:
| Q |
119 |
actcttcacatggataatcttcattggctttctccattttctaccttgaaatatctccgccttagtggcattgatcttcatgaggaaactaattggcttc |
218 |
Q |
| |
|
||||| |||||||||| |||||||||||||||| || ||||| |||| ||||||||| ||||||| ||||||||||| | ||||||| |||| | ||| |
|
|
| T |
19333629 |
actctgcacatggatagtcttcattggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaaccaatttgtttc |
19333728 |
T |
|
| Q |
219 |
aagcagtgaatacacttccttcactattagagttacgattaacaagttgtaacctgaataacttcccatctgttgaatatttgaatttgtcttcacttgt |
318 |
Q |
| |
|
|| ||||||| ||||||||||||||||||| |||| || | |||||| |||| |||||||||| || ||| |||||||||||||||||| |||| |
|
|
| T |
19333729 |
aaatagtgaattcacttccttcactattagaattacagttgagtgattgtaaattgaacaacttcccatttgatgagtatttgaatttgtcttcaattgt |
19333828 |
T |
|
| Q |
319 |
aactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaat |
418 |
Q |
| |
|
||||||| ||||||||||||||| | |||||| || ||| |||||||||||||||||| |||||||||||| ||||| |||||| || |||| |
|
|
| T |
19333829 |
aactcttgatctttctagaaacaactttacctctcatttacttgatgggttttttaatctttccaaagatctcaagtatctcgacctttcttggaacaat |
19333928 |
T |
|
| Q |
419 |
atacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc |
478 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19333929 |
atatatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctc |
19333988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 26 - 478
Target Start/End: Original strand, 18146351 - 18146809
Alignment:
| Q |
26 |
tttgatgtgataagaattccatccattcaacacaacatcacacattcctctaaacttgtccaccttaacttatcctccttcaattttgataatactcttc |
125 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||||||| ||||| ||| | ||||| ||||||||| | || | | | |||||| | |
|
|
| T |
18146351 |
tttgatatgataagaattccatccattcaacacaatatcacacatatatctaaccttttgtaccttgacttatcct---ttaactacggtcctactctgc |
18146447 |
T |
|
| Q |
126 |
acatggataatcttcattggctttctccattttctaccttgaaatatctccgccttagtggcattgatcttcatgaggaaactaattggcttcaagcagt |
225 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||||| ||||||| || ||| |||||| ||| |
|
|
| T |
18146448 |
acatgcataatcttcattggctttctccactttcttccttgaaatatctctcccttagtgagattgatcttcacaaggaaaccaactggtttcaagtagt |
18146547 |
T |
|
| Q |
226 |
gaatacacttccttcactattagagttacgattaacaagttgtaacctgaataacttcc---------catctgttgaatatttgaatttgtcttcactt |
316 |
Q |
| |
|
||| ||||||||||||||||| | ||| || | |||||||||||| |||||| ||||| ||| ||||||||||||||||||||| |
|
|
| T |
18146548 |
aaattcacttccttcactattaaaattaaagttgtttaattgtaacctgaacaacttcataattaacacatctattgggtatttgaatttgtcttcactt |
18146647 |
T |
|
| Q |
317 |
gtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaagatctcacttatcttgaccttcacgagagca |
416 |
Q |
| |
|
|||||||| |||||| |||| ||| | |||||| || |||||||||||| ||||||||| ||||||||| ||| |||||| |||| | ||||||| |
|
|
| T |
18146648 |
ataactcttgatctttcaggaaataatttaacctctcatttacctgatgggtattttaatcttaccaaagatatcaactatcttagccttgaggagagca |
18146747 |
T |
|
| Q |
417 |
atatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc |
478 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18146748 |
atatatatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttaatctc |
18146809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 20 - 472
Target Start/End: Complemental strand, 17728165 - 17727708
Alignment:
| Q |
20 |
aataaatttgatgtgataagaattccatccattcaacacaacatcacacattcctctaaacttgtccaccttaacttatcctccttcaattttgataata |
119 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||||| ||| || || ||| | || | ||||||||| | ||| | | | |
|
|
| T |
17728165 |
aataaatttgatgccataagaattccatccattcatcacaacatcacacgttcatcgaaccttttgtacactgacttatcct---taaatcaaggtccaa |
17728069 |
T |
|
| Q |
120 |
ctcttcacatggataatcttcattggctttctccattttctaccttgaaatatctccgccttagtggcattgatcttcatgaggaaactaattggcttca |
219 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||| ||||| |||| |||||||| ||| | ||| |||||||||||| ||||||| ||||||||||| |
|
|
| T |
17728068 |
ctctgcacatggatagtcttcattggctttctccactttcttccttacaatatctcaacctcaatggaattgatcttcataaggaaacaaattggcttca |
17727969 |
T |
|
| Q |
220 |
agcagtgaatacacttccttcactattagagttacgattaacaagttgtaacctgaataacttcc---------catctgttgaatatttgaatttgtct |
310 |
Q |
| |
|
|| | ||||||||||||||||||| ||||| |||| || | | || ||||| || ||||||| ||||| |||| ||||||||||||||| |
|
|
| T |
17727968 |
agtattgaatacacttccttcactgttagaattacagttgagtgggtgcaacctaaacaacttcctgatcaatccatctattgagtatttgaatttgtct |
17727869 |
T |
|
| Q |
311 |
tcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaagatctcacttatcttgaccttcacg |
410 |
Q |
| |
|
||| |||||||||||| |||||| | ||| || |||||||| | | |||| ||| |||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
17727868 |
tcaattgtaactctttatctttcaaacaacgatttcacctctcactt-cctggtggattttttaatctcaccaaagatctcacctatgttgaccttcacg |
17727770 |
T |
|
| Q |
411 |
agagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacacctt |
472 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||||||||| | ||||||| |
|
|
| T |
17727769 |
agagcaatatacatggtgagataccttctagcttggtaaaccttcaaaatttaacacacctt |
17727708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 20 - 472
Target Start/End: Complemental strand, 19029394 - 19028937
Alignment:
| Q |
20 |
aataaatttgatgtgataagaattccatccattcaacacaacatcacacattcctctaaacttgtccaccttaacttatcctccttcaattttgataata |
119 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||||| ||| || || ||| | || | ||||||||| | ||| | | | |
|
|
| T |
19029394 |
aataaatttgatgccataagaattccatccattcatcacaacatcacacgttcatcgaaccttttgtacactgacttatcct---taaatcaaggtccaa |
19029298 |
T |
|
| Q |
120 |
ctcttcacatggataatcttcattggctttctccattttctaccttgaaatatctccgccttagtggcattgatcttcatgaggaaactaattggcttca |
219 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||| ||||| |||| |||||||| ||| | ||| |||||||||||| ||||||| ||||||||||| |
|
|
| T |
19029297 |
ctctgcacatggatagtcttcattggctttctccactttcttccttacaatatctcaacctcaatggaattgatcttcataaggaaacaaattggcttca |
19029198 |
T |
|
| Q |
220 |
agcagtgaatacacttccttcactattagagttacgattaacaagttgtaacctgaataacttcc---------catctgttgaatatttgaatttgtct |
310 |
Q |
| |
|
|| | ||||||||||||||||||| ||||| |||| || | | || ||||| || ||||||| ||||| |||| ||||||||||||||| |
|
|
| T |
19029197 |
agtattgaatacacttccttcactgttagaattacagttgagtgggtgcaacctaaacaacttcctgatcaatccatctattgagtatttgaatttgtct |
19029098 |
T |
|
| Q |
311 |
tcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaagatctcacttatcttgaccttcacg |
410 |
Q |
| |
|
||| |||||||||||| |||||| | ||| || |||||||| | | |||| ||| |||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
19029097 |
tcaattgtaactctttatctttcaaacaacgatttcacctctcactt-cctggtggattttttaatctcaccaaagatctcacctatgttgaccttcacg |
19028999 |
T |
|
| Q |
411 |
agagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacacctt |
472 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||||||||| | ||||||| |
|
|
| T |
19028998 |
agagcaatatacatggtgagataccttctagcttggtaaaccttcaaaatttaacacacctt |
19028937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 24 - 477
Target Start/End: Original strand, 19375213 - 19375672
Alignment:
| Q |
24 |
aatttgatgtgataagaattccatccattcaacacaacatcacacattcctctaaacttgtccaccttaacttatcctccttcaattttgataatactct |
123 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||| |||||||||| ||||| ||| | |||| ||||||||| |||| | | |||||| |
|
|
| T |
19375213 |
aatttgacgtgataagaattccgtccattcaacacaacttcacacattcatctaaccttttgttccttgacttatcct---tcaactacagtcctactct |
19375309 |
T |
|
| Q |
124 |
tcacatggataatcttcattggctttctccattttctaccttgaaatatctccgccttagtggcat---------tgatcttcatgaggaaactaattgg |
214 |
Q |
| |
|
||||||||||||||||| ||||||||| || ||||| |||||||||||||| ||| |||| | |||||||||| ||| ||| |||||| |
|
|
| T |
19375310 |
gcacatggataatcttcaatggctttcttcactttcttccttgaaatatctcaacctcggtggagtctttggagttgatcttcataaggtaaccaattgg |
19375409 |
T |
|
| Q |
215 |
cttcaagcagtgaatacacttccttcactattagagttacgattaacaagttgtaacctgaataacttcccatctgttgaatatttgaatttgtcttcac |
314 |
Q |
| |
|
|| ||| ||||| | ||||||||||||||||||| |||| || | | ||||||||||| ||||| ||||||||||| | |||||||||||||||| |
|
|
| T |
19375410 |
tttgaagtagtgacttcacttccttcactattagaattacagttgagtcggtgtaacctgaacaactttccatctgttgagtttttgaatttgtcttcaa |
19375509 |
T |
|
| Q |
315 |
ttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaagatctcacttatcttgaccttcacga-ga |
413 |
Q |
| |
|
|||||| |||| ||||||| ||||||| |||||| | || |||||||||||||||||||||||||||||||| |||| |||||||||||| ||| || |
|
|
| T |
19375510 |
ttgtaagtcttgatctttcttcaaacaatttcacctttcatttacctgatgggttttttaatctcaccaaagatatcacctatcttgacctt-gcgatga |
19375608 |
T |
|
| Q |
414 |
gcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatct |
477 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| |
|
|
| T |
19375609 |
ataatatatatggtgagataccttcaagcttgctaaaccttccaaatttgagacaacttgatct |
19375672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 123 - 478
Target Start/End: Original strand, 19392764 - 19393128
Alignment:
| Q |
123 |
ttcacatggataatcttcattggctttctccattttctaccttgaaatatctccgccttagtggcattgatcttcatgaggaaactaattggcttcaagc |
222 |
Q |
| |
|
|||| ||||||| |||| |||||||||||||| ||||| | |||||||||||| ||| ||||| |||||||||||| ||||||| |||||||||||||| |
|
|
| T |
19392764 |
ttcaaatggatagtcttgattggctttctccactttcttcattgaaatatctcttcctaagtggaattgatcttcataaggaaaccaattggcttcaagc |
19392863 |
T |
|
| Q |
223 |
agtgaatacacttccttcactattagagttacgattaacaagttgtaacctgaataacttc---------ccatctgttgaatatttgaatttgtcttca |
313 |
Q |
| |
|
||||| || |||| ||||||| ||||| |||| ||||| |||||||| | |||||| |||||| |||| |||||||||||||||||| |
|
|
| T |
19392864 |
agtgagtatactttcttcactgttagaattacaattaagtgaatgtaacctcgaaaacttcaagatcaagccatcttttgagtatttgaatttgtcttca |
19392963 |
T |
|
| Q |
314 |
cttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaagatctcacttatcttgaccttcacgaga |
413 |
Q |
| |
|
|||||||||||| ||||||| ||||| ||||||| |||||||| ||||||||||||||| |||| | || ||| || ||| ||||| | |||| |
|
|
| T |
19392964 |
cttgtaactcttgatctttcttacaacaacttcacctccaatatacctaatgggttttttaatcgtaccacatatgccacctaccttcaccttaaggaga |
19393063 |
T |
|
| Q |
414 |
gcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc |
478 |
Q |
| |
|
|||| ||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
19393064 |
gcaacatatatggtgagataccttcaagtttgctaaaccttcaaaatttgagataccttaatctc |
19393128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 18 - 444
Target Start/End: Original strand, 18022321 - 18022747
Alignment:
| Q |
18 |
ataataaatttgatgtgataagaattccatccattcaacacaacatcacacattcctctaaacttgtccaccttaacttatcctccttcaattttgataa |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||||||||||| || |||||| || || ||||| ||||||||| || || | |
|
|
| T |
18022321 |
ataatgaatttgatgtgataagaattccatctattcaacacaacatcacacactcatctaaatttttctaccttgacttatcct---------ttaatga |
18022411 |
T |
|
| Q |
118 |
tactcttcacatggataatcttcattggctttctccattttctaccttgaaatatctccgccttagtggcattgatcttcatgaggaaactaattggctt |
217 |
Q |
| |
|
| ||||||||| ||||||||| | ||||||||| || ||||| |||||||||||||| ||| ||||| ||||||||||| ||||||| || ||| || |
|
|
| T |
18022412 |
tggtcttcacatagataatcttgactggctttcttcactttcttccttgaaatatctcgacctcagtggacttgatcttcataaggaaaccaactggttt |
18022511 |
T |
|
| Q |
218 |
caagcagtgaatacacttccttcactattagagttacgattaacaagttgtaacctgaataacttc---------ccatctgttgaatatttgaatttgt |
308 |
Q |
| |
|
|||| | | ||| ||||||||||||||||| | |||| || | |||||| |||||| |||| |||||| |||| ||||||||||||| |
|
|
| T |
18022512 |
caagtaatcaattcacttccttcactattacaattacagttgagcgattgtaaattgaatagcttcatgatcaacccatctattgagtatttgaatttgt |
18022611 |
T |
|
| Q |
309 |
cttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaagatctcacttatcttgaccttca |
408 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| |||||||| || |||| |||||||||||||||||||||||||| ||| ||||||| ||| |
|
|
| T |
18022612 |
cttcacttgtaactcttgatctttctttcaacaacttcacctctcatttaccaaatgggttttttaatctcaccaaagatatcaactatcttgtcctctt |
18022711 |
T |
|
| Q |
409 |
cgagagcaatatacatggtgagataccttcaagctt |
444 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
18022712 |
agagagcaatatacatggtgagataccttcaagctt |
18022747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 26 - 463
Target Start/End: Original strand, 18164683 - 18165120
Alignment:
| Q |
26 |
tttgatgtgataagaattccatccattcaacacaacatcacacattcctctaaacttgtccaccttaacttatcctccttcaattttgataatactcttc |
125 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||| |||||||||| |||||||||||| ||||| |||||||| | | || || |||| | |
|
|
| T |
18164683 |
tttgatgtgataagaattacatcaattcaacacaacttcacacattcatctaaacttgtctaccttgacttatccaacagc----ttaat--tactagt- |
18164775 |
T |
|
| Q |
126 |
acatggataatcttcattggctttctccattttctaccttgaaatatctccgccttagtggcattgatcttcatgaggaaactaattggcttcaagcagt |
225 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||| |||||||||||| ||||||| |||||| |||||||||| |
|
|
| T |
18164776 |
--atggataatcttgattggctttctccactttcttccttgaaatatctcaaccttagttttattgatcttcataaggaaaccaattggattcaagcagt |
18164873 |
T |
|
| Q |
226 |
gaatacacttccttcactattagagttacgattaacaagttgtaacctgaataacttc---------ccatctgttgaatatttgaatttgtcttcactt |
316 |
Q |
| |
|
|| ||||||||||||||||||||| |||| || | | ||| |||||||| |||||| ||||| || | ||| |||||||||||||| || |
|
|
| T |
18164874 |
gagtacacttccttcactattagaattacagttgagtaattgcaacctgaacaacttcataattggaacatcttttaagtatgtgaatttgtcttcaatt |
18164973 |
T |
|
| Q |
317 |
gtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaagatctcacttatcttgaccttcacgagagca |
416 |
Q |
| |
|
||||||||| ||||||| ||| || |||||||| | ||| |||||| ||||||||||||||||||||| ||| | |||| |||| | || || |
|
|
| T |
18164974 |
gtaactcttgatctttcttacaactatttcacctctcacttacttgatggattttttaatctcaccaaagatatcaactttcttagcctttcagggaaca |
18165073 |
T |
|
| Q |
417 |
atatacatggtgagataccttcaagcttgctaaaccttcaaaatttg |
463 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18165074 |
atataaatggtgagataccttcaagcttgctaaaacttcaaaatttg |
18165120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 26 - 255
Target Start/End: Complemental strand, 24493897 - 24493671
Alignment:
| Q |
26 |
tttgatgtgataagaattccatccattcaacacaacatcacacattcctctaaacttgtccaccttaacttatcctccttcaattttgataatactcttc |
125 |
Q |
| |
|
|||||| ||||||| |||||| |||||||| |||||||||||||||| |||||||||||| ||||| |||||||| || ||| |||| |||||||| |
|
|
| T |
24493897 |
tttgatttgataagtattccaaccattcaaaacaacatcacacattcatctaaacttgtctaccttgacttatcccccctcagctttg---gtactcttc |
24493801 |
T |
|
| Q |
126 |
acatggataatcttcattggctttctccattttctaccttgaaatatctccgccttagtggcattgatcttcatgaggaaactaattggcttcaagcagt |
225 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| | |||||||||||| ||||||||| || ||||||| ||||||||| ||||||||||||| ||| |
|
|
| T |
24493800 |
acatggataatcttcattggcttcctccactttcttcgttgaaatatctcaaccttagtggaatcgatcttcgtgaggaaaccaattggcttcaagaagt |
24493701 |
T |
|
| Q |
226 |
gaatacacttccttcactattagagttacg |
255 |
Q |
| |
|
| ||||||||||||||||||||| ||||| |
|
|
| T |
24493700 |
ggctacacttccttcactattagaattacg |
24493671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 35 - 477
Target Start/End: Original strand, 25462580 - 25463028
Alignment:
| Q |
35 |
ataagaattccatccattcaacacaacatcacacattcctctaaacttgtccaccttaacttatcctccttcaattttgataatactcttcacatggata |
134 |
Q |
| |
|
||||| |||||| || |||||||||||||||||||||| |||||||||| | | ||| |||||||| | ||| || || |||||||||||||||| |
|
|
| T |
25462580 |
ataagtattccagcctttcaacacaacatcacacattcatctaaacttgactatcttgacttatccccgctcaccctt---aacactcttcacatggata |
25462676 |
T |
|
| Q |
135 |
atcttcattggctttctccattttctaccttgaaatatctccgccttagtggcattgatcttcatgaggaaactaattggcttcaagcagtgaatacact |
234 |
Q |
| |
|
|||||||||||||||||||||| ||| |||| ||||||||| ||| | || |||||||||||| |||||||||||||||||||||||||| ||| || |
|
|
| T |
25462677 |
atcttcattggctttctccattatcttccttaaaatatctcaacctcaatgcaattgatcttcataaggaaactaattggcttcaagcagtgtctactct |
25462776 |
T |
|
| Q |
235 |
tccttcactattagagttacgattaacaag-ttgtaacctgaataacttc---------ccatctgttgaatatttgaatttgtcttcacttgtaactct |
324 |
Q |
| |
|
| |||||||||| ||||| | | | |||| |||| | |||| |||||| ||||| ||| ||||||||||||||||| ||| ||||||| |
|
|
| T |
25462777 |
ttcttcactattcgagttgc-acttgcaagcttgtgatttgaacaacttcatgaccaaatcatctattgggtatttgaatttgtcttcgcttttaactct |
25462875 |
T |
|
| Q |
325 |
ttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatatacat |
424 |
Q |
| |
|
| ||||||| ||||| |||||||| || |||||||||| |||||||||||| | |||||| ||| |||||||||||| | ||| ||||| |
|
|
| T |
25462876 |
tgatctttcttacaacaacttcacctctcatttacctgatggtttttttaatctctcaaaagatttcatgtatcttgacctttcatttaataatgtacat |
25462975 |
T |
|
| Q |
425 |
ggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatct |
477 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25462976 |
ggtgacataccttcaagcttgctaaaccttcaaaatttgagacaccttgatct |
25463028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 26 - 381
Target Start/End: Original strand, 18143769 - 18144124
Alignment:
| Q |
26 |
tttgatgtgataagaattccatccattcaacacaacatcacacattcctctaaacttgtccaccttaacttatcctccttcaattttgataatactcttc |
125 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| | | |||| || | | |
|
|
| T |
18143769 |
tttgatatgataagaattccatccattcaacacaacatcacacattcctctaaacttgtctaccttgacttatcctacagc---tttgttactggt---- |
18143861 |
T |
|
| Q |
126 |
acatggataatcttcattggctttctccattttctaccttgaaatatctccgccttagtggcattgatcttcatgaggaaactaattggcttcaagcagt |
225 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| |||| ||||||||| ||| ||||| |||||||||||| ||||||| |||||||||||| ||| |
|
|
| T |
18143862 |
--atggataatcttgattggctttctccactttcttccttaaaatatctcaacctcagtggaattgatcttcataaggaaaccaattggcttcaaatagt |
18143959 |
T |
|
| Q |
226 |
gaatacacttccttcactattagagttacgattaacaagttgtaacctgaataactt---------cccatctgttgaatatttgaatttgtcttcactt |
316 |
Q |
| |
|
|||||||||||||||||||||||| |||| || | |||||||||||| ||||| ||||| | | | |||||||||||||| ||| || |
|
|
| T |
18143960 |
gaatacacttccttcactattagaattacagttgagttcttgtaacctgaacaacttaatgatcaacccatatatcaagtatttgaatttgtcgtcaatt |
18144059 |
T |
|
| Q |
317 |
gtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcac |
381 |
Q |
| |
|
||||||||| ||||||| |||||| |||||||| || |||||||| |||||||||||||||| |
|
|
| T |
18144060 |
gtaactcttgatctttctttaaacaacttcacctctcatttacctgataggttttttaatctcac |
18144124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 291 - 478
Target Start/End: Original strand, 19424408 - 19424595
Alignment:
| Q |
291 |
ttgaatatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaagatct |
390 |
Q |
| |
|
|||| |||||||||||||||||| ||||||| ||| ||||||| |||||| || ||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
19424408 |
ttgagtatttgaatttgtcttcaattgtaacacttgatctttctttcaacaatttcgcctctcatttacctgatgggttttttaatctcaccaaagatct |
19424507 |
T |
|
| Q |
391 |
cacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc |
478 |
Q |
| |
|
||| |||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||| ||||| |
|
|
| T |
19424508 |
cacctatcttagacttcaccagagcaatatacatggtgggataccttcaagcttgctaaaccttcaaaatttgacataccttgatctc |
19424595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 26 - 360
Target Start/End: Original strand, 19436401 - 19436729
Alignment:
| Q |
26 |
tttgatgtgataagaattccatccattcaacacaacatcacacattcctctaaacttgtccaccttaacttatcctccttcaattttgataatactcttc |
125 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||| || ||||| ||||||| | | || | || || ||| | |
|
|
| T |
19436401 |
tttgatgtgataagaatttcatccattcaacacaatatcacacattcatctaaacttctctaccttgacttatcgtac---aact---atcctattctgc |
19436494 |
T |
|
| Q |
126 |
acatggataatcttcattggctttctccattttctaccttgaaatatctccgccttagtggcattgatcttcatgaggaaactaattggcttcaagcagt |
225 |
Q |
| |
|
||||| |||||||| ||||||||||| | ||||| |||| ||||||||| ||||| || |||||||||||| ||||||| || ||| |||||||||| |
|
|
| T |
19436495 |
acatgaataatcttgattggctttcttccctttcttccttaaaatatctcaaccttactgaaattgatcttcataaggaaaccaactggtttcaagcagt |
19436594 |
T |
|
| Q |
226 |
gaatacacttccttcactattagagttacgattaacaagttgtaacctgaataacttcccatctgttgaatatttgaatttgtcttcacttgtaactctt |
325 |
Q |
| |
|
|||| ||||| ||||||||||||| |||| || |||||| |||| || |||||||||||||| ||||| ||||| |||||||||||||||||| |
|
|
| T |
19436595 |
gaattcactttcttcactattagaattacagttgcgtgaatgtaacttgaacaaattcccatctgttgagtatttcaatttatcttcacttgtaactctt |
19436694 |
T |
|
| Q |
326 |
tctctttctagaaacaatatcacctcttatatacc |
360 |
Q |
| |
|
||||||| ||||||| ||||||||||| |||| |
|
|
| T |
19436695 |
gatctttctggaaacaaattcacctcttatttacc |
19436729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 118 - 478
Target Start/End: Original strand, 17949437 - 17949807
Alignment:
| Q |
118 |
tactcttcacatggataatcttcattggctttctccattttctaccttgaaatatctccgccttagtggcattgatcttc-atgaggaaactaattggct |
216 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||| |||| || |||||| ||| |||| |||||||||| || |||||| ||||||| | |
|
|
| T |
17949437 |
tactctgcacatggataatcttcattggctttctccactttcttccttaaattatctcaacctcggtggaattgatcttcaataaggaaaataattggtt |
17949536 |
T |
|
| Q |
217 |
tcaagcagtgaatacacttccttcactattagagttacgattaacaagttgtaacctgaataacttc---------ccatctgttgaatatttgaatttg |
307 |
Q |
| |
|
||||| ||||||| ||||| ||||||||||||| ||| || |||||||||||||||||| | ||| | ||||||||||| |
|
|
| T |
17949537 |
tcaagtagtgaattcactttcttcactattagaattaaagttgtttcactgtaacctgaataacttcttgattggaacgtctatcaggtatttgaattta |
17949636 |
T |
|
| Q |
308 |
tcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaagatctcacttatcttgacctt- |
406 |
Q |
| |
|
||||||||||||||||||| |||| | |||||| ||||||| || |||| |||||||||| ||||||||||||||| |||| | |||||||||| |
|
|
| T |
17949637 |
tcttcacttgtaactctttatcttgatgaaaacaacttcacctcccatttaccaaatgggtttttcaatctcaccaaagatatcacctctcttgaccttg |
17949736 |
T |
|
| Q |
407 |
cacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc |
478 |
Q |
| |
|
||| | | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
17949737 |
cacta-aataatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctc |
17949807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 136 - 478
Target Start/End: Original strand, 18108067 - 18108418
Alignment:
| Q |
136 |
tcttcattggctttctccattttctaccttgaaatatctccgccttagtggcattgatcttcatgaggaaactaattggcttcaagcagtgaatacactt |
235 |
Q |
| |
|
|||||||||||||||| || |||| |||||||||||||| ||||| |||| ||||||||||| ||||||| || ||| |||||| ||||||| ||||| |
|
|
| T |
18108067 |
tcttcattggctttcttcacattcttccttgaaatatctcagccttggtggagttgatcttcataaggaaaccaactggtttcaagtagtgaattcactt |
18108166 |
T |
|
| Q |
236 |
ccttcactattagagttacgattaacaagttgtaacctgaataacttc---------ccatctgttgaatatttgaatttgtcttcacttgtaactcttt |
326 |
Q |
| |
|
||||||||||||| |||| || | |||||| ||||||||| ||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
18108167 |
tcttcactattagaattacagttgtttgactataaccttaataacttcttgattggaacatctatcagatatttgaatttgtcttcacttgtaactctta |
18108266 |
T |
|
| Q |
327 |
ctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatatacatgg |
426 |
Q |
| |
|
|||| | |||||| ||||||| || |||| |||||||||| ||||||||||| ||| |||| | |||||||||| || |||||| |||| |
|
|
| T |
18108267 |
atcttgatgaaaacaacttcacctcccatttaccaaatgggtttttcaatctcaccaatgatatcacctctcttgaccttgcgctgaataatatatatgg |
18108366 |
T |
|
| Q |
427 |
tgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18108367 |
tgagataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctc |
18108418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 35 - 472
Target Start/End: Original strand, 16676743 - 16677192
Alignment:
| Q |
35 |
ataagaattccatccattcaacacaacatcacacattcctctaaacttgtccaccttaacttatcctccttcaattttgataatactcttcacat----- |
129 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||| | ||||| |||||| ||||| ||||||||||| || |||||| ||||||| || |
|
|
| T |
16676743 |
ataagaattccatccattcaacaaaacctcacacatgcatctaaccttgtctaccttgacttatcctccctcggccttgata---ctcttcatataagta |
16676839 |
T |
|
| Q |
130 |
-ggataatcttcattggctttctccattttctaccttgaaatatctccgccttagtggcattgatcttcatgaggaaactaattggcttcaagcagtgaa |
228 |
Q |
| |
|
|||||||||||||||||||| | | ||||| ||||||| |||||| ||||||||| ||||||||||| ||||||| |||||| |||| |||||| |
|
|
| T |
16676840 |
tggataatcttcattggctttttatactttcttccttgaagtatctcgaccttagtggacttgatcttcataaggaaaccaattggattcagaaagtgaa |
16676939 |
T |
|
| Q |
229 |
tacacttccttcactattagagttacgattaacaagttgtaacctgaataactt---------cccatctgttgaatatttgaatttgtcttcacttgta |
319 |
Q |
| |
|
||||||||||||||||||||| || || || | |||||| |||| ||||| | ||||| ||| |||||||||| |||||| ||||| |
|
|
| T |
16676940 |
tacacttccttcactattagaattgcggttgagttcttgtaaattgaacaacttcatgctcaactcatctattgggtatttgaattcctcttcaattgta |
16677039 |
T |
|
| Q |
320 |
actctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaagatctcacttatcttgacc-ttcacgagagcaat |
418 |
Q |
| |
|
|||||| ||||||| |||||| | |||| | | ||| | |||||||| ||||||||||||||| ||| ||||||||| |||| | || ||| |
|
|
| T |
16677040 |
actcttgatctttcttacaacaatttaacctttcagttactaaacgggtttttaaatctcaccaaagatatcaagcatcttgacctttcatg-gaataat |
16677138 |
T |
|
| Q |
419 |
atacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacacctt |
472 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
16677139 |
atacatggtgagataccttcaagcttgttaaaccttcaacatttgagacacctt |
16677192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 296 - 478
Target Start/End: Original strand, 19436827 - 19437009
Alignment:
| Q |
296 |
tatttgaatttgtcttcacttgtaactctttctctttctaga-aacaatatcacctcttatatacctgatgggttttttaatctcaccaaagatctcact |
394 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||| ||| ||| || |||||||| | |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
19436827 |
tatttaaatttgtcttcacttgtaactctttatctttc-agataacgatttcacctctcacttaccggatgggttttttaatctcaccaaagatctcacc |
19436925 |
T |
|
| Q |
395 |
tatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc |
478 |
Q |
| |
|
| |||| ||||| | |||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19436926 |
tctctttacctttcgtttaacaatattcatggggagataccttctagcttgctaaaccttcaaaatttgagacaccttgatctc |
19437009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 19419508 - 19419684
Alignment:
| Q |
18 |
ataataaatttgatgtgataagaattccatccattcaacacaacatcacacattcctctaaacttgtccaccttaacttatcctccttcaattttgataa |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| | ||| ||||| |||||||| || |
|
|
| T |
19419508 |
ataataaatttaatgtgataagaattccatccattcaacacaacatcacacattcatctaaccttgtgaaacttgactta---tccttcaactt------ |
19419598 |
T |
|
| Q |
118 |
tactcttcacatggataatcttcattggctttctccattttctaccttgaaatatctccgccttagtggcattgatcttcatgaggaaa |
206 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| ||||| |||| ||||||||| ||| |||| |||||||||||| |||||| |
|
|
| T |
19419599 |
---tcttcacatgtataatcttgattggctttctccactttcttccttaaaatatctcaacctcggtggaattgatcttcataaggaaa |
19419684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 19333517 - 19333592
Alignment:
| Q |
25 |
atttgatgtgataagaattccatccattcaacacaacatcacacattcctctaaacttgtccaccttaacttatcc |
100 |
Q |
| |
|
|||||| ||||||| |||||||||||||| |||||||||||||||||| ||||||||||| ||||| |||||||| |
|
|
| T |
19333517 |
atttgacgtgataataattccatccattccacacaacatcacacattcatctaaacttgtataccttgacttatcc |
19333592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 19392658 - 19392733
Alignment:
| Q |
26 |
tttgatgtgataagaattccatccattcaacacaacatcacacattcctctaaacttgtccaccttaacttatcct |
101 |
Q |
| |
|
||||| ||||||||||||||| ||||||||| ||||||||| ||||| |||||||||| | ||||| ||||||||| |
|
|
| T |
19392658 |
tttgacgtgataagaattccagccattcaacgcaacatcacgcattcatctaaacttgcctaccttgacttatcct |
19392733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 18107973 - 18108046
Alignment:
| Q |
26 |
tttgatgtgataagaattccatccattcaacacaacatcacacattcctctaaacttgtccaccttaacttatc |
99 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||| |||||| ||||||| |
|
|
| T |
18107973 |
tttgatgtcataagaattccatccattcaacacaatatcacacattcatctaacctttcgcaccttgacttatc |
18108046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 247
Target Start/End: Original strand, 19424231 - 19424355
Alignment:
| Q |
123 |
ttcacatggataatcttcattggctttctccattttctaccttgaaatatctccgccttagtggcattgatcttcatgaggaaactaattggcttcaagc |
222 |
Q |
| |
|
||||||||||||||||| ||||||||||| || ||||| | ||| | |||| ||||||||| ||||||||| | | |||| |||||| |||||| |
|
|
| T |
19424231 |
ttcacatggataatcttgattggctttcttcactttcttcgttggagaatctttaccttagtggaattgatctttctaaagaaagcaattggattcaagg |
19424330 |
T |
|
| Q |
223 |
agtgaatacacttccttcactatta |
247 |
Q |
| |
|
||| | ||||||||||||||||||| |
|
|
| T |
19424331 |
agtcagtacacttccttcactatta |
19424355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 19413731 - 19413798
Alignment:
| Q |
34 |
gataagaattccatccattcaacacaacatcacacattcctctaaacttgtccaccttaacttatcct |
101 |
Q |
| |
|
||||||||||||| | ||| ||||||| ||||||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
19413731 |
gataagaattccaactattaaacacaatatcacacattcatctaaacttgtttaccttgacttatcct |
19413798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #35
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 291 - 406
Target Start/End: Complemental strand, 24493626 - 24493511
Alignment:
| Q |
291 |
ttgaatatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaagatct |
390 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||| ||||||| |||||| ||| |||| | |||| ||| |||||||| |||||||||||| | |
|
|
| T |
24493626 |
ttgagtattcgaatttgtcttcacttgtaactcttgatctttctgaaaacaacttcagctctcagttaccaaatgcattttttaacctcaccaaagatat |
24493527 |
T |
|
| Q |
391 |
cacttatcttgacctt |
406 |
Q |
| |
|
||| ||||||| |||| |
|
|
| T |
24493526 |
cacctatcttggcctt |
24493511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 478
Target Start/End: Original strand, 18144141 - 18144208
Alignment:
| Q |
411 |
agagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc |
478 |
Q |
| |
|
|||| |||||| ||||||| ||||||||||||||||||||||||| || | |||| ||||| ||||| |
|
|
| T |
18144141 |
agagtaatatatatggtgacttaccttcaagcttgctaaaccttcagaaatcgagataccttgatctc |
18144208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 478
Target Start/End: Original strand, 19407112 - 19407144
Alignment:
| Q |
446 |
ctaaaccttcaaaatttgagacaccttcatctc |
478 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
|
|
| T |
19407112 |
ctaaaccttcaaaatttgagacaccttgatctc |
19407144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 19436731 - 19436771
Alignment:
| Q |
209 |
aattggcttcaagcagtgaatacacttccttcactattaga |
249 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
19436731 |
aattggcttcaaatagtgaattcacttccttcactattaga |
19436771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 466
Target Start/End: Complemental strand, 13667361 - 13666911
Alignment:
| Q |
18 |
ataataaatttgatgtgataagaattccatccattcaacacaacatcacacattcctctaaacttgtccaccttaacttatcctccttcaattttgataa |
117 |
Q |
| |
|
||||| ||||||||||||||| |||| ||||||||||||||||||||||| |||| |||||||||||| ||||| |||||||| ||| |||||||||||| |
|
|
| T |
13667361 |
ataatgaatttgatgtgataaaaatttcatccattcaacacaacatcacaaattcatctaaacttgtctaccttgacttatccgcctacaattttgataa |
13667262 |
T |
|
| Q |
118 |
tactcttcacatggataatcttcattggctttctccattttctaccttgaaatatctccgccttagtggcattgatcttcatgaggaaactaattggctt |
217 |
Q |
| |
|
|| ||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||| ||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
13667261 |
tattcttcacattgataatcttcattggttttctccattttcttccttgaaatatctccggtttaatggcattgatcttcataaggaaactaattggctc |
13667162 |
T |
|
| Q |
218 |
caagcagtgaatacacttccttcactattagagttacgattaacaagttgtaacctgaataacttcccatctgttgaatatttgaatttgtcttcacttg |
317 |
Q |
| |
|
|||| |||||||||||||||||||| |||||| ||||| || | | ||||||||||||| |||||||||||| |||| ||||||||||||||||| || | |
|
|
| T |
13667161 |
caagtagtgaatacacttccttcacaattagaattacggttgagaggttgtaacctgaacaacttcccatctcttgagtatttgaatttgtcttcgctgg |
13667062 |
T |
|
| Q |
318 |
taactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaagatctcacttatcttgacc-ttcacgagagca |
416 |
Q |
| |
|
|||||||| ||||||| |||||| |||||||| |||||||| ||| ||||||||||||||||||| ||||||| | |||||| ||||| | || | |
|
|
| T |
13667061 |
taactcttgatctttctgaaaacaacttcacctctcatatacctaatgagttttttaatctcaccaaaaatctcaccactgttgacctttcac-atagta |
13666963 |
T |
|
| Q |
417 |
--atatacatggtgagataccttcaagcttgctaaaccttcaaaatttgaga |
466 |
Q |
| |
|
||||| ||||| | |||||||||| |||||||||| |||||| ||||||| |
|
|
| T |
13666962 |
atatatatatggtaaaataccttcaaccttgctaaacattcaaactttgaga |
13666911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 135 - 313
Target Start/End: Original strand, 2509634 - 2509818
Alignment:
| Q |
135 |
atcttcattggctttctccattttctaccttgaaatatctccgcctt------agtggcattgatcttcatgaggaaactaattggcttcaagcagtgaa |
228 |
Q |
| |
|
|||||||||||||||||||| ||||| |||| ||||||||| |||| ||| ||||||||||||| || |||| |||||| | |||| ||||| |
|
|
| T |
2509634 |
atcttcattggctttctccactttcttccttaaaatatctcaaccttggtttcagtaccattgatcttcataagaaaaccaattgggtacaagtagtgag |
2509733 |
T |
|
| Q |
229 |
tacacttccttcactattagagttacgattaacaagttgtaacctgaataacttcccatctgttgaatatttgaatttgtcttca |
313 |
Q |
| |
|
||||||||||||||||||||||||| | || | | |||| |||| |||||||||||| | || |||||||||||||||||| |
|
|
| T |
2509734 |
tacacttccttcactattagagttaaggttgaatgactataacttgaacaacttcccatctatagagtatttgaatttgtcttca |
2509818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 146; Significance: 1e-76; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 26 - 478
Target Start/End: Original strand, 4921 - 5382
Alignment:
| Q |
26 |
tttgatgtgataagaattccatccattcaacacaacatcacacattcctctaaacttgtccaccttaacttatcctccttcaattttgataatactcttc |
125 |
Q |
| |
|
||||| || |||||| ||||| || ||||||||||||||||| ||| |||||||||||| ||||| ||||| || || ||| ||||||||| ||||||| |
|
|
| T |
4921 |
tttgacgttataagagttccaatcactcaacacaacatcacacgttcatctaaacttgtctaccttgacttagcccccctcatttttgataaaactcttc |
5020 |
T |
|
| Q |
126 |
acatggataatcttcattggctttctccattttctaccttgaaatatctccgccttagtggcattgatcttcatgaggaaactaattggcttcaagcagt |
225 |
Q |
| |
|
|||||||||||||||||||||||||| || |||| |||||||||||||| ||||||||| |||||||||| | ||||||| || |||||||||||||| |
|
|
| T |
5021 |
acatggataatcttcattggctttcttcactttcatccttgaaatatctcatccttagtgggattgatcttcgtaaggaaaccaactggcttcaagcagt |
5120 |
T |
|
| Q |
226 |
gaatacacttccttcactattagagttacgattaacaagttgtaacctgaataacttc---------ccatctgttgaatatttgaatttgtcttcactt |
316 |
Q |
| |
|
| ||| ||||||||||||||||| |||| | | | ||||| || || |||||| |||||| |||| ||||| ||||||||||||||| |
|
|
| T |
5121 |
aagtacccttccttcactattagaattacaactgagttactgtaaactaaacaacttcatgatcaaaccatctattgagtatttcaatttgtcttcactt |
5220 |
T |
|
| Q |
317 |
gtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaagatctcacttatcttgaccttcacgagagca |
416 |
Q |
| |
|
|||||||||| ||||||| ||||||| | ||||| || |||| |||||||||||||||| ||||||||| |||| | |||||||||| | | | |
|
|
| T |
5221 |
gtaactctttatctttctggaaacaactttacctccaatttaccaaatgggttttttaatctaaccaaagatatcacctctcttgaccttgcgcaaaata |
5320 |
T |
|
| Q |
417 |
atatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc |
478 |
Q |
| |
|
||||| |||| ||||||||||| ||| ||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
5321 |
atatatatggcgagataccttctagcatgctaaaccttcaaaatttgagacatcttgatctc |
5382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 21 - 478
Target Start/End: Original strand, 8459001 - 8459455
Alignment:
| Q |
21 |
ataaatttgatgtgataagaattccatccattcaacacaacatcacacattcctctaaacttgtccaccttaacttatcctccttcaattttgataatac |
120 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||| ||| | |||||| ||||||||| | | | | || | | |
|
|
| T |
8459001 |
ataaatttgatgtgataagaattccatcgattcaacacaacatcacacatgcatctaaccttttgcaccttgacttatcctacaccg---tagttactgc |
8459097 |
T |
|
| Q |
121 |
tcttcacatggataatcttcattggctttctccattttctaccttgaaatatctccgccttagtggcattgatcttcatgaggaaactaattggcttcaa |
220 |
Q |
| |
|
| | | |||||||||| |||||||||||| ||||| |||| ||| ||||| ||| | ||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
8459098 |
ttt------gaataatcttcaatggctttctccactttcttccttaaaaaatctcaacctcaatggaattgatcttcataaggaaactaattggcttcaa |
8459191 |
T |
|
| Q |
221 |
gcagtgaatacacttccttcactattagagttacgattaacaagttgtaacctgaataactt------cccatctgttgaatatttgaatttgtcttcac |
314 |
Q |
| |
|
|||||| ||||||| |||| ||||||||||||| |||| | ||||| ||||| ||||| ||||||| |||| ||||||||||||||||||| |
|
|
| T |
8459192 |
gcagtggctacactttcttccctattagagttacacttaagtaagtgtaaactgaacaactttatcaacccatctcttgagtatttgaatttgtcttcac |
8459291 |
T |
|
| Q |
315 |
ttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaagatctcacttatcttgaccttcacgagag |
414 |
Q |
| |
|
||||||||||| ||||||| | ||||| |||| ||| | ||||| |||||||||||||||| ||||||||| |||| |||||||||||| | | |
|
|
| T |
8459292 |
ttgtaactcttgatctttcttggaacaacttcacatctcctttacctaatgggttttttaatctgaccaaagatatcacctatcttgacctttcggtttg |
8459391 |
T |
|
| Q |
415 |
caatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc |
478 |
Q |
| |
|
| ||||| |||| ||||| |||||||||||| || |||||| |||||||||||||||| ||||| |
|
|
| T |
8459392 |
ccatatatatggcgagatgccttcaagcttgttataccttccaaatttgagacaccttgatctc |
8459455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 5e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 121 - 466
Target Start/End: Original strand, 15531973 - 15532318
Alignment:
| Q |
121 |
tcttcacatggataatcttcattggctttctccattttctaccttgaaatatctccgccttagtggcattgatcttcatgaggaaactaattggcttcaa |
220 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||| |||||||||||||| ||||| | | |||||||||||| ||||||| || ||| ||||| |
|
|
| T |
15531973 |
tcttcacatggataatcttgattggctttctccactttcatccttgaaatatctcaaccttaattggattgatcttcataaggaaaccaactggattcaa |
15532072 |
T |
|
| Q |
221 |
gcagtgaatacacttccttcactattagagttacgattaacaagttgtaacctgaataacttcccatctgttgaatatttgaatttgtcttcacttgtaa |
320 |
Q |
| |
|
|||| || ||||||||||||||||||||| ||| | || | ||||| ||||| |||||||||||| | || ||||||||||||||||||||||||| |
|
|
| T |
15532073 |
gcagagagtacacttccttcactattagatttaaggttgagtgactgtaaactgaacaacttcccatctatcgagtatttgaatttgtcttcacttgtaa |
15532172 |
T |
|
| Q |
321 |
ctctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatat |
420 |
Q |
| |
|
||||| ||||||| | ||||| ||| | | || |||| |||||||||||||||| ||||| |||||| ||||||||||||| | | ||||| |
|
|
| T |
15532173 |
ctcttgatctttcttggaacaacttcagccatcatttaccaaatgggttttttaatctttccaaatatctcaattatcttgacctttcaaaaaataatat |
15532272 |
T |
|
| Q |
421 |
acatggtgagataccttcaagcttgctaaaccttcaaaatttgaga |
466 |
Q |
| |
|
|| || ||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
15532273 |
acttgatgagataccttcaagtttgctaaatcttcaaaatttgaga |
15532318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 124 - 477
Target Start/End: Complemental strand, 2710960 - 2710598
Alignment:
| Q |
124 |
tcacatggataatcttcattggctttctccattttctaccttgaaatatctccgccttagtggcattgatcttcatgaggaaactaattggcttcaagca |
223 |
Q |
| |
|
|||||| ||||||||| |||||||||||||| ||||| | |||||||||||| ||| || || |||||||||||| | ||||| |||||||||||| | |
|
|
| T |
2710960 |
tcacatagataatcttaattggctttctccactttcttctttgaaatatctcaacctcagcggtattgatcttcataaagaaaccaattggcttcaaata |
2710861 |
T |
|
| Q |
224 |
gtgaatacacttccttcactattagagttacgattaacaagttgtaacctgaataacttc---------ccatctgttgaatatttgaatttgtcttcac |
314 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||| | |||||| || | |||||| || ||| ||| |||||||||||||||||||| |
|
|
| T |
2710860 |
gtgaatacacttccttcactattagaagtacaattgtctttttgtaaactaagcaacttcatgatcaacccgtctattgcatatttgaatttgtcttcac |
2710761 |
T |
|
| Q |
315 |
ttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaagatctcacttatcttgaccttcacgagag |
414 |
Q |
| |
|
|| |||||||| |||||| | ||||| |||||||| | |||| ||||||||||||||||||||||| | ||| |||||||||||| | || |
|
|
| T |
2710760 |
ttataactcttgaactttcttggaacaacttcacctctcctttaccaaatgggttttttaatctcaccaaacacatcaactatcttgacctttcatatag |
2710661 |
T |
|
| Q |
415 |
caatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatct |
477 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||| |||| |||||||||||| ||| |||| |
|
|
| T |
2710660 |
caatatacatggtgagataccttctagcttgttaaagcttcgaaatttgagacaactttatct |
2710598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2156 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: scaffold2156
Description:
Target: scaffold2156; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 26 - 406
Target Start/End: Complemental strand, 409 - 21
Alignment:
| Q |
26 |
tttgatgtgataagaattccatccattcaacacaacatcacacattcctctaaacttgtccaccttaacttatcctccttcaattttgataatactcttc |
125 |
Q |
| |
|
||||| || |||||| ||||| || ||||||||||||||||| ||| |||||||||||| ||||| |||||||| || ||| ||||||||| ||||||| |
|
|
| T |
409 |
tttgacgttataagagttccaatcactcaacacaacatcacacgttcatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttc |
310 |
T |
|
| Q |
126 |
acatggataatcttcattggctttctccattttctaccttgaaatatctccgccttagtggcattgatcttcatgaggaaactaattggcttcaagcagt |
225 |
Q |
| |
|
|||||||||||||||||||||||||| || |||| |||| ||||||||| ||||| ||| |||||||||| | ||||||| || |||||||||||||| |
|
|
| T |
309 |
acatggataatcttcattggctttcttcactttcatcctt-aaatatctcatccttattgggattgatcttcgtaaggaaaccaactggcttcaagcagt |
211 |
T |
|
| Q |
226 |
gaatacacttccttcactattagagttacgattaacaagttgtaacctgaataacttc---------ccatctgttgaatatttgaatttgtcttcactt |
316 |
Q |
| |
|
| ||| |||||||||||||||| |||| | | | ||||| || || |||||| |||||| |||| ||||| ||||||||||||||| |
|
|
| T |
210 |
aagtacctttccttcactattagaattacaactgagttactgtaaactaaacaacttcatgatcaatccatctattgagtatttcaatttgtcttcactt |
111 |
T |
|
| Q |
317 |
gtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaagatctcacttatcttgacctt |
406 |
Q |
| |
|
|||||||||| ||||||| ||||||| | ||||| || |||| |||||||||||||||| ||||||||| |||| | |||||||||| |
|
|
| T |
110 |
gtaactctttatctttctggaaacaactttacctccaatttaccaaatgggttttttaatctaaccaaagatatcacctctcttgacctt |
21 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 345 - 478
Target Start/End: Complemental strand, 4257 - 4124
Alignment:
| Q |
345 |
tcacctcttatatacctgatgggttttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagctt |
444 |
Q |
| |
|
|||||||| || |||| |||||||||||||||||||||||||| |||| | |||||||||| | | |||||| |||||||||||||| ||||| |
|
|
| T |
4257 |
tcacctctaatttaccaaatgggttttttaatctcaccaaagatatcacctctcttgaccttgcgcaaaataatatatatggtgagatacctcgtagctt |
4158 |
T |
|
| Q |
445 |
gctaaaccttcaaaatttgagacaccttcatctc |
478 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||| |
|
|
| T |
4157 |
gctaaaccttcaaaatttgagacatcttgatctc |
4124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 345 - 478
Target Start/End: Complemental strand, 3727 - 3594
Alignment:
| Q |
345 |
tcacctcttatatacctgatgggttttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagctt |
444 |
Q |
| |
|
|||||||| || |||| |||||||||||||||||||||||||| |||| | |||||||||| | | |||||| |||||||||||||| ||||| |
|
|
| T |
3727 |
tcacctctaatttaccaaatgggttttttaatctcaccaaagatatcacctctcttgaccttgcgcaaaataatatatatggtgagatacctcgtagctt |
3628 |
T |
|
| Q |
445 |
gctaaaccttcaaaatttgagacaccttcatctc |
478 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||| |
|
|
| T |
3627 |
gctaaaccttcaaaatttgagacatcttgatctc |
3594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University