View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14093_high_6 (Length: 247)
Name: NF14093_high_6
Description: NF14093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14093_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 72 - 231
Target Start/End: Complemental strand, 45073296 - 45073137
Alignment:
| Q |
72 |
tcgatatataattaggattccaattgaggtaagtaaagtccgacaaattatttcaatcaaggatcgaactcatattctaccaaataatttgagcttaact |
171 |
Q |
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| T |
45073296 |
tcgatatataattaggattccaattgaggtaagtaaagtccgacaaattattccaatcaaggatcgaactcatattctaccaaataatttgagcttaact |
45073197 |
T |
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| Q |
172 |
gaagtgtattaaatgtactaattgcttttaggaaattttaaatttcagtttaattagtat |
231 |
Q |
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| T |
45073196 |
gaagtgtattaaatgtactaattgcttttaggaaattttaaatttcagtttaattagtat |
45073137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 45073392 - 45073323
Alignment:
| Q |
1 |
tccattgactaccacctccattgactactgccattactcgtggttctccttttcgtttatttgtttcctt |
70 |
Q |
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| T |
45073392 |
tccattgactaccacctccattgactactgccattactcgtggttctcctttttgtttatttgtttcctt |
45073323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 8880060 - 8879949
Alignment:
| Q |
72 |
tcgatatataattaggattccaattgaggtaagtaaagtccgacaaattatttcaatcaaggatcgaactcatattctaccaaataatttgagcttaact |
171 |
Q |
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| T |
8880060 |
tcgatatataattagtattccagttgaggtaagtaaagtccgacaaattattacaatcaaggatcaaactcatattctaccaaataatttaagcttaact |
8879961 |
T |
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| Q |
172 |
gaagtgtattaa |
183 |
Q |
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| T |
8879960 |
gaagtgtattaa |
8879949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 8883870 - 8883820
Alignment:
| Q |
94 |
attgaggtaagtaaagtccgacaaattatttcaatcaaggatcgaactcat |
144 |
Q |
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| T |
8883870 |
attgacgtaagtcaagtctgataaactatttcaatcaaggatcgaactcat |
8883820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 8880154 - 8880122
Alignment:
| Q |
38 |
tcgtggttctccttttcgtttatttgtttcctt |
70 |
Q |
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| T |
8880154 |
tcgtggttctccttttcgtttatttatttcctt |
8880122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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