View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14093_high_7 (Length: 202)
Name: NF14093_high_7
Description: NF14093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14093_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 35128392 - 35128563
Alignment:
| Q |
19 |
atgatgatgataagggtaatgtttgcaatgaggtagaattaggtgaatctgcaagaggtaatttagagttagaagttgatggctcaaatgattcacagca |
118 |
Q |
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| T |
35128392 |
atgatgatgataagggtaatgtttgcaatgaggtagaattaggtgaatctgcaagaggtaatttagagttagaggttgatggctcaaatgattcacagca |
35128491 |
T |
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| Q |
119 |
gccggtcactgaaacttctgaactgattgatggaagaagttttcgagatgaaccaattggcgatttgatgat |
190 |
Q |
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| T |
35128492 |
gccggtcactgaaacttctgaactgattgatggaagaagttttcgagatgaaccaattggcgatttgatgat |
35128563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 35128746 - 35128912
Alignment:
| Q |
19 |
atgatgatgataagggtaatgtttgcaatgaggtagaattaggtgaatctgcaagaggtaatttagagttagaagttgatggctcaaatgattcacagca |
118 |
Q |
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| T |
35128746 |
atgatgataataagggaagtgtattcaatgaggtagaatcaggcgaaccttcaagaggtaatttagagttagaggttgatggttcaaatgattcacagaa |
35128845 |
T |
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| Q |
119 |
gccggtcactgaaacttctgaactgattgatggaagaagttttcgagatgaaccaattggcgatttg |
185 |
Q |
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| T |
35128846 |
gccggtctctgaaacttctgaactgattgatggaagaggttttcaagatgaaccaattggtgatttg |
35128912 |
T |
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