View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14093_low_2 (Length: 487)
Name: NF14093_low_2
Description: NF14093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14093_low_2 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 7 - 475
Target Start/End: Complemental strand, 46230381 - 46229925
Alignment:
| Q |
7 |
cccttctccctcttcacttcatcaaggtgaaatatatcatatctattttaatcattaattaaagttttctagctaggttatattctattataactttagg |
106 |
Q |
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| T |
46230381 |
cccttctccctcttcacttcatcaaggtgaaatatatcatatctattttaatcattaattaaagttttctagctaggttat------------ctttagg |
46230294 |
T |
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| Q |
107 |
gttatttattgtttctctaacagggaaaacgttctttatctgatcaaatgaatgaagcagtgaattacataaatcacttgaagaagaatatgaaagaact |
206 |
Q |
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| T |
46230293 |
gttatttattgtttctctaacagggaaaacgttctttatctgatcaaatgaatgaggcagtgaattacataaatcacttgaagaagaatatgaaagaact |
46230194 |
T |
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| Q |
207 |
aagttacaaaagggatgaactgaaaaaactctctaatcctagtcttaaaaataaaagccatgtttcttgtagtttcactatccacaagaataatagaact |
306 |
Q |
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| T |
46230193 |
aagttacaaaagggatgaactgaaaaaactctctaatcctagtcttaaaaataaaagccatgtttcttgtagtttcactatccacaagaataatagaact |
46230094 |
T |
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| Q |
307 |
gtgggaattgaaatcagtactaaaactggctttatagaggaaggtgccccactttctaaatttctggaacaactgatgagatatggacttgatgttgtta |
406 |
Q |
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| T |
46230093 |
gtgggaattgaaatcagtactaaaactggctttatagaggaaggtgccccactttctaaatttctggaacaactgatgagatatggacttgatgttgtta |
46229994 |
T |
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| Q |
407 |
gctgcttttctattcaagtcaatggaaaattactccatagtgtgcagtgtgaggtacatattgtttaca |
475 |
Q |
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| T |
46229993 |
gctgcttttctattcaagtcaatggaaaattactccatagtgtgcagtgtgaggtacatattgtttaca |
46229925 |
T |
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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 239
Target Start/End: Original strand, 220012 - 220125
Alignment:
| Q |
126 |
acagggaaaacgttctttatctgatcaaatgaatgaagcagtgaattacataaatcacttgaagaagaatatgaaagaactaagttacaaaagggatgaa |
225 |
Q |
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||||||||| || || |||||||||| ||||| || ||||||||||||||||| ||| || | || ||||| || ||||| || ||| || |||||| |
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| T |
220012 |
acagggaaagcgatcaatatctgatcatatgaacgaggcagtgaattacataaaacacatgcaaaataatatcaatgaacttggtaccaagagagatgaa |
220111 |
T |
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| Q |
226 |
ctgaaaaaactctc |
239 |
Q |
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| T |
220112 |
ctcaaaaaactctc |
220125 |
T |
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