View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14093_low_3 (Length: 422)

Name: NF14093_low_3
Description: NF14093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14093_low_3
NF14093_low_3
[»] chr6 (22 HSPs)
chr6 (37-341)||(13035671-13035975)
chr6 (37-404)||(6472972-6473342)
chr6 (62-362)||(6526296-6526596)
chr6 (56-374)||(6465245-6465563)
chr6 (71-372)||(6457287-6457588)
chr6 (65-330)||(6505436-6505701)
chr6 (196-402)||(1831877-1832086)
chr6 (155-374)||(6528105-6528324)
chr6 (61-246)||(6516057-6516242)
chr6 (65-360)||(6496599-6496894)
chr6 (273-334)||(1822311-1822372)
chr6 (65-219)||(6461778-6461932)
chr6 (163-230)||(6520628-6520695)
chr6 (1-40)||(13035618-13035657)
chr6 (273-322)||(1827158-1827207)
chr6 (273-333)||(1839051-1839111)
chr6 (296-362)||(6516295-6516361)
chr6 (306-371)||(1841986-1842051)
chr6 (175-244)||(6523435-6523504)
chr6 (1-35)||(6472919-6472953)
chr6 (73-126)||(6520532-6520585)
chr6 (76-124)||(6528361-6528409)
[»] chr7 (4 HSPs)
chr7 (277-372)||(3753997-3754092)
chr7 (272-362)||(4046156-4046246)
chr7 (296-363)||(46383848-46383914)
chr7 (68-123)||(9665259-9665314)
[»] chr1 (1 HSPs)
chr1 (48-219)||(35231382-35231544)
[»] chr4 (1 HSPs)
chr4 (68-123)||(13536283-13536338)


Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 37 - 341
Target Start/End: Original strand, 13035671 - 13035975
Alignment:
Q  37 aaagtcatcaccgataacaacgatttcatcttacttttatggaaaattgatagcaagagctgcaaggttagcattgattgctgaagaggtgaattacctt 136  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  13035671 aaagtcatcaccgataacaacgacatcatcttacttttatggaaaattgatagcaagagctgcaaggttagcattgataactgaagaggtgaattacctt 13035770  T
Q  137 gatgcaattccaatcgtaaagaagtacttgaaggaatccattgagccttggcttgatggaacttttaatggaaatggatttctctattataaaaaatggg 236  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13035771 gatgcaattccaattgtgaagaagtacttgaaggaatccattgagccttggcttgatggaacttttaatggaaatggatttctctatgataaaaaatggg 13035870  T
Q  237 gaggtattatgacgaaacaaggttctactgataccagtgctgattttgggttcggaatttataatgaccatcattatcatttaggttactttctctatgg 336  Q
    |||||||||| |||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13035871 gaggtattataacgaaacaaggttctactgataccggtgctgatttcgggtttggaatttataatgaccatcattatcatttaggttactttctctatgg 13035970  T
Q  337 aattg 341  Q
    |||||    
T  13035971 aattg 13035975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 37 - 404
Target Start/End: Original strand, 6472972 - 6473342
Alignment:
Q  37 aaagtcatcaccgataacaacgatttcatcttacttttatggaaaattgatagcaagagctgcaaggttagcattgattgctgaagaggtgaattacctt 136  Q
    |||||||||||||||||||||    |||||||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||    
T  6472972 aaagtcatcaccgataacaacagcatcatcttacttttatggaaaattgatagcaagggctgcgaggttagcattgatagccgaagaggtgaattacctt 6473071  T
Q  137 gatgcaattccaatcgtaaagaagtacttgaaggaatccattgagccttggcttgatggaacttttaatggaaatggatttctctattataaaaaatggg 236  Q
    |||||||||||||| || ||||| || |||||||||||||  ||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||    
T  6473072 gatgcaattccaattgtgaagaaatatttgaaggaatccaccgagccttggctcgatggaacatttaatggaaatggatttctctatgataaaaaatggg 6473171  T
Q  237 gaggtattatgacgaaacaaggttctactgataccagtgctgattttgggttcggaatttataatgaccatcattatcatttaggttactttctctatgg 336  Q
    |||||||||| || ||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6473172 gaggtattataaccaaacaaggttctactgataccggtgctgatttcgggttcggaatttataatgatcatcattatcatttaggttactttctctatgg 6473271  T
Q  337 aattgaagtacttgctaagattgatctagtttggggtaag---tccaggcctcaagcctatgcactcatgg 404  Q
    ||||| ||| |||||||||||||||| |||||||||||||   |  | |||||||||||||||||||||||    
T  6473272 aattgcagtgcttgctaagattgatccagtttggggtaagaaatataagcctcaagcctatgcactcatgg 6473342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 62 - 362
Target Start/End: Complemental strand, 6526596 - 6526296
Alignment:
Q  62 tcatcttacttttatggaaaattgatagcaagagctgcaaggttagcattgattgctgaagaggtgaattaccttgatgcaattccaatcgtaaagaagt 161  Q
    |||||||| ||||||||||||||||| ||||||||||||||  | |||||||| || ||||||||   || ||||||||  |||||||  || |  ||||    
T  6526596 tcatcttatttttatggaaaattgattgcaagagctgcaagacttgcattgatagcggaagaggtttgtttccttgatgtgattccaaaagttagaaagt 6526497  T
Q  162 acttgaaggaatccattgagccttggcttgatggaacttttaatggaaatggatttctctattataaaaaatggggaggtattatgacgaaacaaggttc 261  Q
    | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||| | || ||||| |||||    
T  6526496 atttgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctttatgataaaaaatggggagatattgtaaccaaacatggttc 6526397  T
Q  262 tactgataccagtgctgattttgggttcggaatttataatgaccatcattatcatttaggttactttctctatggaattgaagtacttgctaagattgat 361  Q
    |||  || || |||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||    
T  6526396 tacaaatgccggtgctgattttgggttcggagtttataatgatcatcattatcatttaggatactttctctatggaattgcagtgcttgctaagattgat 6526297  T
Q  362 c 362  Q
    |    
T  6526296 c 6526296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 56 - 374
Target Start/End: Complemental strand, 6465563 - 6465245
Alignment:
Q  56 acgatttcatcttacttttatggaaaattgatagcaagagctgcaaggttagcattgattgctgaagaggtgaattaccttgatgcaattccaatcgtaa 155  Q
    |||| ||| |||||||||||||| || ||||| || || ||||| ||||| || |||||||||||||||||   || ||||||||  ||||| |   | |    
T  6465563 acgaattcgtcttacttttatggcaagttgattgctagggctgctaggttggctttgattgctgaagaggtttgtttccttgatgtgattccgaaaatta 6465464  T
Q  156 agaagtacttgaaggaatccattgagccttggcttgatggaacttttaatggaaatggatttctctattataaaaaatggggaggtattatgacgaaaca 255  Q
     |||||  ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||| ||| | || |||||    
T  6465463 ggaagtttttgaaggaaactattgagccttggcttgatggaacttttaatggaaatggatttctctatgatggaaaatggggaggaattgttaccaaaca 6465364  T
Q  256 aggttctactgataccagtgctgattttgggttcggaatttataatgaccatcattatcatttaggttactttctctatggaattgaagtacttgctaag 355  Q
    ||| |||| ||||||  ||||||||||||| |||||| |||||||||| ||||||||||||||||| |||||||||||||||||||  || ||||| |||    
T  6465363 agggtctaatgatactggtgctgattttggattcggagtttataatgatcatcattatcatttaggatactttctctatggaattgctgtgcttgcaaag 6465264  T
Q  356 attgatctagtttggggta 374  Q
    ||||||| | |||||||||    
T  6465263 attgatccaatttggggta 6465245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 71 - 372
Target Start/End: Complemental strand, 6457588 - 6457287
Alignment:
Q  71 ttttatggaaaattgatagcaagagctgcaaggttagcattgattgctgaagaggtgaattaccttgatgcaattccaatcgtaaagaagtacttgaagg 170  Q
    ||||||||||||||||||||||| || |||||||| | |||||| |||||||| |||||| | || ||| | || |||    | || |||| ||||||||    
T  6457588 ttttatggaaaattgatagcaagggcagcaaggttgggattgatagctgaagaagtgaatgatctcgattccataccagcgatcaaaaagttcttgaagg 6457489  T
Q  171 aatccattgagccttggcttgatggaacttttaatggaaatggatttctctattataaaaaatggggaggtattatgacgaaacaaggttctactgatac 270  Q
    || | || ||||| ||| |  ||||||||||||| | |||||| ||||| ||| ||  |||||||||||| || || || |||||||| |||   ||| |    
T  6457488 aaacgatcgagccatggttgaatggaacttttaacgaaaatggttttctttatgatggaaaatggggaggaatcattaccaaacaaggctctcaagattc 6457389  T
Q  271 cagtgctgattttgggttcggaatttataatgaccatcattatcatttaggttactttctctatggaattgaagtacttgctaagattgatctagtttgg 370  Q
      | || |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| ||| ||||| |||||||||| || ||||    
T  6457388 aggggcagattttgggttcggtatttataatgatcatcattatcatttaggatactttctctatggaattgcagtgcttgcaaagattgatccagcttgg 6457289  T
Q  371 gg 372  Q
    ||    
T  6457288 gg 6457287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 65 - 330
Target Start/End: Complemental strand, 6505701 - 6505436
Alignment:
Q  65 tcttacttttatggaaaattgatagcaagagctgcaaggttagcattgattgctgaagaggtgaattaccttgatgcaattccaatcgtaaagaagtact 164  Q
    ||||| |||||||||||||| || |||||||| || ||| | |||||||| |||||||||||    | | ||||||| |||  ||  ||||  || |  |    
T  6505701 tcttatttttatggaaaattaattgcaagagcagctaggcttgcattgatagctgaagaggttttcttctttgatgctattgaaaaagtaagaaactttt 6505602  T
Q  165 tgaaggaatccattgagccttggcttgatggaacttttaatggaaatggatttctctattataaaaaatggggaggtattatgacgaaacaaggttctac 264  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||  |||| ||  ||||||| ||||     
T  6505601 tgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctatatgataaaaaatggggaggacttattactcaacaagggtctaa 6505502  T
Q  265 tgataccagtgctgattttgggttcggaatttataatgaccatcattatcatttaggttactttct 330  Q
    ||||    ||| |||||| || ||||||||||| ||||| ||||| | ||| ||||| || |||||    
T  6505501 tgatggtggtggtgatttcggtttcggaatttacaatgatcatcactttcacttaggatattttct 6505436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 196 - 402
Target Start/End: Original strand, 1831877 - 1832086
Alignment:
Q  196 aacttttaatggaaatggatttctctattataaaaaatggggaggtattatgacgaaacaaggttctactgataccagtgctgattttgggttcggaatt 295  Q
    ||||||| || |||||||| ||||||||  ||| |||||||||| ||||||  | |||||||| |||| | ||||  ||| |||||| ||||| ||||||    
T  1831877 aacttttcatagaaatggaattctctatggtaagaaatggggagctattatagccaaacaagggtctaataatactggtgttgatttcgggtttggaatt 1831976  T
Q  296 tataatgaccatcattatcatttaggttactttctctatggaattgaagtacttgctaagattgatctagtttggggta---agtccaggcctcaagcct 392  Q
     |||| |||||||||||||||||||| |||||||||| |||||||| ||| ||||| |||||||||| | |||||||||   |||  | |||||||||||    
T  1831977 aataacgaccatcattatcatttaggatactttctctttggaattgcagtgcttgcaaagattgatccaatttggggtagagagtataagcctcaagcct 1832076  T
Q  393 atgcactcat 402  Q
    || |||||||    
T  1832077 attcactcat 1832086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 155 - 374
Target Start/End: Complemental strand, 6528324 - 6528105
Alignment:
Q  155 aagaagtacttgaaggaatccattgagccttggcttgatggaacttttaatggaaatggatttctctattataaaaaatggggaggtattatgacgaaac 254  Q
    |||||||| ||||||||    |||||||||||||||||||||||||| || || ||||||||||||||| |||||||||||||||| ||||| || ||||    
T  6528324 aagaagtatttgaaggagatgattgagccttggcttgatggaactttcaaaggtaatggatttctctatgataaaaaatggggagggattattacaaaac 6528225  T
Q  255 aaggttctactgataccagtgctgattttgggttcggaatttataatgaccatcattatcatttaggttactttctctatggaattgaagtacttgctaa 354  Q
    |||| ||||||||| | | |||||| | ||| || |||||||||||| | ||||||  |  ||| || || ||| | |||| |||||  || ||||||||    
T  6528224 aaggctctactgattcaaatgctgagtatggttttggaatttataataatcatcatggtactttgggatattttgtttatgcaattgctgtgcttgctaa 6528125  T
Q  355 gattgatctagtttggggta 374  Q
    |||||||| || ||||||||    
T  6528124 gattgatccagcttggggta 6528105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 61 - 246
Target Start/End: Original strand, 6516057 - 6516242
Alignment:
Q  61 ttcatcttacttttatggaaaattgatagcaagagctgcaaggttagcattgattgctgaagaggtgaattaccttgatgcaattccaatcgtaaagaag 160  Q
    |||||||||||| |||||| ||||||| |||||||| ||||||||||||||||| ||||||||  |   || | |||| || |||| ||  || | ||||    
T  6516057 ttcatcttacttctatggacaattgattgcaagagcagcaaggttagcattgatagctgaagaattttttttcgttgacgctattcaaaaagtca-gaag 6516155  T
Q  161 -tacttgaaggaatccattgagccttggcttgatggaacttttaatggaaatggatttctctattataaaaaatggggaggtattat 246  Q
     |  ||||||||| | ||||| || |||||||||||||||||||| |||||||||||||| ||| | |||||||||||||| |||||    
T  6516156 ctttttgaaggaaacaattgaaccatggcttgatggaacttttaacggaaatggatttctgtatgacaaaaaatggggaggaattat 6516242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 65 - 360
Target Start/End: Complemental strand, 6496894 - 6496599
Alignment:
Q  65 tcttacttttatggaaaattgatagcaagagctgcaaggttagcattgattgctgaagaggtgaattaccttgatgcaattccaatcgtaaagaagtact 164  Q
    ||||||| |||||| |||||||| | ||| || || ||||| |||||||| || ||||||||    ||| | ||||  |||||||  || |||||||  |    
T  6496894 tcttactcttatggtaaattgattggaagggcggcgaggtttgcattgatagccgaagaggtttcatacttagatgtgattccaaaggttaagaagtttt 6496795  T
Q  165 tgaaggaatccattgagccttggcttgatggaacttttaatggaaatggatttctctattataaaaaatggggaggtattatgacgaaacaaggttctac 264  Q
    |||| ||| |||||||||||||| | ||||||||||| ||||| |||||||||||  |  || | |||||||| || ||| | || | |||||| |||      
T  6496794 tgaaagaaaccattgagccttggttagatggaactttaaatgggaatggatttctacaagatgataaatggggtggcattgttaccatacaagggtctgt 6496695  T
Q  265 tgataccagtgctgattttgggttcggaatttataatgaccatcattatcatttaggttactttctctatggaattgaagtacttgctaagattga 360  Q
    |||| | | ||||||||  || |||||||| |||||||| |||  | |||| ||||| |||||||| ||||||||||  || ||| ||||||||||    
T  6496694 tgattctaatgctgattccggtttcggaatctataatgatcatgctgatcacttaggatactttctttatggaattgctgttcttactaagattga 6496599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 273 - 334
Target Start/End: Original strand, 1822311 - 1822372
Alignment:
Q  273 gtgctgattttgggttcggaatttataatgaccatcattatcatttaggttactttctctat 334  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||  ||||||||||||    
T  1822311 gtgctgattttgggttttgaatttataatgaccatcattatcatttagaatactttctctat 1822372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 65 - 219
Target Start/End: Original strand, 6461778 - 6461932
Alignment:
Q  65 tcttacttttatggaaaattgatagcaagagctgcaaggttagcattgattgctgaagaggtgaattaccttgatgcaattccaatcgtaaagaagtact 164  Q
    ||||||| |||||| |||||||| | ||| || || ||||| |||||||| |||||||||||   |||| | ||||  |||||||  || |||||||  |    
T  6461778 tcttactcttatggtaaattgattggaagggcggcgaggtttgcattgatagctgaagaggtttcttacttagatgtgattccaaaggttaagaagtttt 6461877  T
Q  165 tgaaggaatccattgagccttggcttgatggaacttttaatggaaatggatttct 219  Q
    | || ||| |||||||||||||| | ||||||||||| ||||| |||||||||||    
T  6461878 taaaagaaaccattgagccttggttagatggaactttaaatgggaatggatttct 6461932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 6520628 - 6520695
Alignment:
Q  163 cttgaaggaatccattgagccttggcttgatggaacttttaatggaaatggatttctctattataaaa 230  Q
    |||||||||| | |||||||||||||||||||||||||||| || |||||| ||||| ||| ||||||    
T  6520628 cttgaaggaaactattgagccttggcttgatggaacttttagtgaaaatggttttctatatgataaaa 6520695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 13035618 - 13035657
Alignment:
Q  1 gaagaatcacatgacaaaattgtttcagctctttcgaaag 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13035618 gaagaatcacatgacaaaattgtttcagctctttcgaaag 13035657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 322
Target Start/End: Original strand, 1827158 - 1827207
Alignment:
Q  273 gtgctgattttgggttcggaatttataatgaccatcattatcatttaggt 322  Q
    |||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  1827158 gtgctgatttcgggtttggaatttataacgaccatcattatcatttaggt 1827207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 333
Target Start/End: Original strand, 1839051 - 1839111
Alignment:
Q  273 gtgctgattttgggttcggaatttataatgaccatcattatcatttaggttactttctcta 333  Q
    |||||||||| ||||| ||||||||| |||| ||||||||||||||||| || ||||||||    
T  1839051 gtgctgatttcgggtttggaatttatgatgagcatcattatcatttaggatagtttctcta 1839111  T

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Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 362
Target Start/End: Original strand, 6516295 - 6516361
Alignment:
Q  296 tataatgaccatcattatcatttaggttactttctctatggaattgaagtacttgctaagattgatc 362  Q
    |||||||| ||||||||||| ||||| || ||||| |||||||||| ||| |||| |||||||||||    
T  6516295 tataatgatcatcattatcaattaggatattttctttatggaattgcagtgcttgttaagattgatc 6516361  T

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Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 371
Target Start/End: Original strand, 1841986 - 1842051
Alignment:
Q  306 atcattatcatttaggttactttctctatggaattgaagtacttgctaagattgatctagtttggg 371  Q
    |||| ||||||||| ||||||||||||||||||||| | | | |||||||||||||| | ||||||    
T  1841986 atcaatatcatttaagttactttctctatggaattgcattgcatgctaagattgatccaatttggg 1842051  T

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Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 244
Target Start/End: Complemental strand, 6523504 - 6523435
Alignment:
Q  175 cattgagccttggcttgatggaacttttaatggaaatggatttctctattataaaaaatggggaggtatt 244  Q
    ||||||||||||||||||||||||||| ||   |||||||||||| ||| || | |||||||||| ||||    
T  6523504 cattgagccttggcttgatggaactttcaaataaaatggatttctatatgatcagaaatggggagatatt 6523435  T

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Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 6472919 - 6472953
Alignment:
Q  1 gaagaatcacatgacaaaattgtttcagctctttc 35  Q
    ||||||||||||||| |||||||||||||||||||    
T  6472919 gaagaatcacatgacgaaattgtttcagctctttc 6472953  T

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Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 6520532 - 6520585
Alignment:
Q  73 ttatggaaaattgatagcaagagctgcaaggttagcattgattgctgaagaggt 126  Q
    ||||||||| ||||| || |||||||||||||||||| | || |||||||||||    
T  6520532 ttatggaaagttgattgctagagctgcaaggttagcaataatagctgaagaggt 6520585  T

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Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 6528409 - 6528361
Alignment:
Q  76 tggaaaattgatagcaagagctgcaaggttagcattgattgctgaagag 124  Q
    |||||||||||| |||||||||||||| || || ||||| |||||||||    
T  6528409 tggaaaattgattgcaagagctgcaagattggctttgatagctgaagag 6528361  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 277 - 372
Target Start/End: Original strand, 3753997 - 3754092
Alignment:
Q  277 tgattttgggttcggaatttataatgaccatcattatcatttaggttactttctctatggaattgaagtacttgctaagattgatctagtttgggg 372  Q
    ||||||||| || |||||||||||||| |||||||||||||||||||| ||||| ||||||||||  || ||||| |||||||||| | |||||||    
T  3753997 tgattttggttttggaatttataatgatcatcattatcatttaggttattttctttatggaattgctgttcttgcaaagattgatccattttgggg 3754092  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 272 - 362
Target Start/End: Complemental strand, 4046246 - 4046156
Alignment:
Q  272 agtgctgattttgggttcggaatttataatgaccatcattatcatttaggttactttctctatggaattgaagtacttgctaagattgatc 362  Q
    |||||||||||||| || ||||| |||||||| |||||||||||||||||||| ||||| |||||||||| ||| ||||| || |||||||    
T  4046246 agtgctgattttggttttggaatgtataatgatcatcattatcatttaggttattttctttatggaattggagttcttgcaaaaattgatc 4046156  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 363
Target Start/End: Complemental strand, 46383914 - 46383848
Alignment:
Q  296 tataatgaccatcattatcatttaggttactttctctatggaattgaagtacttgctaagattgatct 363  Q
    |||||||| |||||| |||||||||| || ||||||||||||||||  || |||||||||||||||||    
T  46383914 tataatgatcatcatcatcatttaggatattttctctatggaattg-cgtgcttgctaagattgatct 46383848  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 9665259 - 9665314
Alignment:
Q  68 tacttttatggaaaattgatagcaagagctgcaaggttagcattgattgctgaaga 123  Q
    |||||||||||||||||||| |||||||| || ||| | |||||||| ||||||||    
T  9665259 tacttttatggaaaattgattgcaagagcagctaggcttgcattgatagctgaaga 9665314  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 219
Target Start/End: Original strand, 35231382 - 35231544
Alignment:
Q  48 cgataacaacgatttcatcttacttttatggaaaattgatagcaagagctgcaaggttagcattgattgctgaagaggtgaattaccttgatgcaattcc 147  Q
    ||||||||| || ||||||||| |||||||||||||||||         ||||||||| || ||||| |||||||||||   || ||||||||  |||||    
T  35231382 cgataacaaggacttcatcttatttttatggaaaattgat---------tgcaaggttggctttgatagctgaagaggtttgtttccttgatgtgattcc 35231472  T
Q  148 aatcgtaaagaagtacttgaaggaatccattgagccttggcttgatggaacttttaatggaaatggatttct 219  Q
    ||  || |||||||| ||||| ||   |||||||||||||||||||||| || | || | ||||||||||||    
T  35231473 aaaagttaagaagtatttgaaagagatcattgagccttggcttgatggagctatcaaagaaaatggatttct 35231544  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 13536283 - 13536338
Alignment:
Q  68 tacttttatggaaaattgatagcaagagctgcaaggttagcattgattgctgaaga 123  Q
    |||||||||||||||||||| |||||||| || ||| | |||||||| ||||||||    
T  13536283 tacttttatggaaaattgattgcaagagcagctaggcttgcattgatagctgaaga 13536338  T

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