View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14093_low_4 (Length: 277)
Name: NF14093_low_4
Description: NF14093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14093_low_4 |
 | |
|
| [»] scaffold0041 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0041 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 15092 - 14965
Alignment:
| Q |
10 |
agatgaaaaccaaacctcgcaccaccttctatacttgccacccactttccagggtcaacatatcctatcgaaatcaaaagcgcgggtataaaagccggaa |
109 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15092 |
agatcaaaaccaaacctcgcaccaccttctatacttgccacccactttccagggtcaacatatcctatcgaaatcaaaagcgcgggtataacagccggaa |
14993 |
T |
|
| Q |
110 |
gtgcgcgaataagaaaaccaggaggggg |
137 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
14992 |
gtgcgcgaataagaaaaccaggaggggg |
14965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 60 - 172
Target Start/End: Original strand, 26458464 - 26458576
Alignment:
| Q |
60 |
agggtcaacatatcctatcgaaatcaaaagcgcgggtataaaagccggaagtgcgcgaataagaaaaccaggagggggcattttactcttggtctgttca |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26458464 |
agggtcaacatatcctatcgaaatcaaaagcgcgggtataaaagccggaagtgcgcgaataagaaaaccaggagggggcattttactcttggtctgttca |
26458563 |
T |
|
| Q |
160 |
gaactcaattgct |
172 |
Q |
| |
|
||||||||||||| |
|
|
| T |
26458564 |
gaactcaattgct |
26458576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 175 - 263
Target Start/End: Original strand, 26458799 - 26458887
Alignment:
| Q |
175 |
tcttagcaaaggacttgttgtgaagcattgtgacggtggattgaaacgagatatcttagttgaatgaaattgagcttcgaagtggaagg |
263 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26458799 |
tcttaacaaaggacttgttgtgaagcattgtgacggtggattgaaacgagatatcttagttgaatgaaattgagcttcgaagtggaagg |
26458887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 183 - 262
Target Start/End: Original strand, 30968405 - 30968483
Alignment:
| Q |
183 |
aaggacttgttgtgaagcattgtgacggtggattgaaacgagatatcttagttgaatgaaattgagcttcgaagtggaag |
262 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30968405 |
aaggacttgttgtgaagcattttgacggtgaattcaaacgagatatcttagttg-ttgaaattgagcttcgaagtggaag |
30968483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University