View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14093_low_5 (Length: 261)
Name: NF14093_low_5
Description: NF14093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14093_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 233
Target Start/End: Original strand, 40510293 - 40510509
Alignment:
| Q |
17 |
atcatatcataagcaaaaaattaaatgggaatattagaagagaagtttgatgggattccaccaattctcttctacgttttttatttgatagtatgtaatt |
116 |
Q |
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| T |
40510293 |
atcatatcataagcaaaaaattaaatgggaatattagaagagaagtttgatgggattccaccaattctcttctacgttttttatttgatagtatgtaatt |
40510392 |
T |
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| Q |
117 |
aagcacttttgtcaataaaaatcatacaataaataataccgtagcaacaaataccctaaacactttatgaaacacatatattttaagtttatgggagttt |
216 |
Q |
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|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40510393 |
aagcacttctatcaataaaaatcatacaataaataataccgtagcaacaaataccctaaacactttattaaacacatatattttaagtttatgggagttt |
40510492 |
T |
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| Q |
217 |
aactcaattgataaaga |
233 |
Q |
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||||||||||||||||| |
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| T |
40510493 |
aactcaattgataaaga |
40510509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 22115724 - 22115819
Alignment:
| Q |
17 |
atcatatcataagcaaaaaattaaatgggaatattagaagagaagtttgatgggattccaccaattctcttctacgttttttatttgatagtatgt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22115724 |
atcatatcataagcaaaaaattaaatgggaatattagaagagaagtttgatgggattccaccaattctcttctacgttttttatttgatagtatgt |
22115819 |
T |
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