View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14094_high_1 (Length: 678)
Name: NF14094_high_1
Description: NF14094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14094_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 9 - 347
Target Start/End: Original strand, 14148800 - 14149136
Alignment:
| Q |
9 |
taattcatttgagggactggttttaggaaggattaactggtggtctcatctcagcgcatagcttaaccactcatttggagtttggacacatcaaaaccag |
108 |
Q |
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| T |
14148800 |
taattcatttgagggactggttttaggaaggattaactggtggtctcatctcagcgcatatcttaaccactcatttggagtttggacacatcaaaaccag |
14148899 |
T |
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| Q |
109 |
gtgcaagttcagggttcaactgtgaggtataaagcttaatagtgttatggtttagtctcattatttcccatcaacatttttacaaagatgagatgatata |
208 |
Q |
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| T |
14148900 |
gtgcaagttcagggttcaactgtgaggtataatgcttaatagtgttatggtttagtctcgttatttcccatcaacatttttacaaagatgagatg--ata |
14148997 |
T |
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| Q |
209 |
catcatatcaaaattcttagatatgctcaaacacaatactagtagtcgataagcttcatcaacacaaaaaggtgttgatgattcctcattctttgacaat |
308 |
Q |
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| T |
14148998 |
catcatatcaaaattcttagatatgctcaaacacaatacaagtagtcgataagcttcatcaacacaaaaaggtgttgatgattcctcattctttgacaat |
14149097 |
T |
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| Q |
309 |
tgatccttttcttaattttgtcattctacggggagaagg |
347 |
Q |
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| T |
14149098 |
tgatccttttcttaattttgtcattctaagggaagaagg |
14149136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 372 - 661
Target Start/End: Original strand, 14149198 - 14149488
Alignment:
| Q |
372 |
ctagttgaagcttcacaatgctcgaataggctaaactttaaattctaacctctaatggggttctggtgtaaaggaaa-gttgttttcttaaataattcat |
470 |
Q |
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| T |
14149198 |
ctagttgaagcttcacaatgctcgaataggctaaactttaaattctaacctctaatggggttctggtgtaaaggaaaagttgttttcttaaataattcat |
14149297 |
T |
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| Q |
471 |
aggattactacgtcttttaattgtgaaatagcttcttattcttactcaaacactgagacattttgcttcttcgtccctgtcactcctctccctttggtgt |
570 |
Q |
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| T |
14149298 |
aggattactacgtcttttaattttgaaatagcttcttattcctactcaaacaccgagacattttgcttcttcgtccctgtcactcctctccctttggtgt |
14149397 |
T |
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| Q |
571 |
gcatctctaaaggggaaatgaagagaaattttgcagacgctaatctttatataatgcttcaatgctacacaatgatcttgacctcaagttt |
661 |
Q |
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| T |
14149398 |
gcatctctaaaggggaaatgaagagaaattttgcagacgctaatcttcatataatgcttcaatgctacacaatgatcttgacctcaagttt |
14149488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 242 - 347
Target Start/End: Original strand, 14143440 - 14143545
Alignment:
| Q |
242 |
caatactagtagtcgataagcttcatcaacacaaaaaggtgttgatgattcctcattctttgacaattgatccttttcttaattttgtcattctacgggg |
341 |
Q |
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| T |
14143440 |
caatactagaagtcgataagtttcaacaacacaaaaaggtattaatgattcctcattcattgacgatcaatcatgttcttaatcttgtcattctaaggga |
14143539 |
T |
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| Q |
342 |
agaagg |
347 |
Q |
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|||||| |
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| T |
14143540 |
agaagg |
14143545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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